PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1vq0a2  ( 231 )          cdcnrekA-naLlvld--eLedmk--egkGevvckwcntryvfs
d1xjha-  (   1 )    mdvefkCtcsrerCadalktlpdeevdsilaedgeidmhCdycgnhylFn
                                                       bbbb      bbbb 

                             60   
d1vq0a2  ( 274 )    e-eLeellkfkvdd
d1xjha-  (  51 )    amdiaeirn--nas
                       aaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1vq0a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vq0a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	HSP33, C-terminal domain	HSP33 redox switch-like	Thermotoga maritima [TaxId: 2336]		view
d1xjha- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1xjha- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	HSP33, C-terminal domain	HSP33 redox switch-like	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	C	D	C	N	R	E	K	A	-	N	A	L	L	V	L	D	-	-	E	L	E	D	M	K	-	-	E	G	K	G	E	V	V	C	K	W	C	N	T	R	Y	V	F	S	E	-	E	L	E	E	L	L	K	F	K	V	D	D
M	D	V	E	F	K	C	T	C	S	R	E	R	C	A	D	A	L	K	T	L	P	D	E	E	V	D	S	I	L	A	E	D	G	E	I	D	M	H	C	D	Y	C	G	N	H	Y	L	F	N	A	M	D	I	A	E	I	R	N	-	-	N	A	S

Member	Chain	UniProtKB	GO term
d1vq0a2	A	Q9X1B4	GO:0005737
d1vq0a2	A	Q9X1B4	GO:0006457
d1vq0a2	A	Q9X1B4	GO:0042026
d1vq0a2	A	Q9X1B4	GO:0044183
d1vq0a2	A	Q9X1B4	GO:0051082
d1vq0a2	A	Q9X1B4	GO:0005737
d1vq0a2	A	Q9X1B4	GO:0006457
d1vq0a2	A	Q9X1B4	GO:0042026
d1vq0a2	A	Q9X1B4	GO:0044183
d1vq0a2	A	Q9X1B4	GO:0051082
d1xjha_	A	P0A6Y5	GO:0005737
d1xjha_	A	P0A6Y5	GO:0006457
d1xjha_	A	P0A6Y5	GO:0051082

									10										20										30										40										50										60
-	-	-	-	-	-	C	D	C	N	R	E	K	A	-	N	A	L	L	V	L	D	-	-	E	L	E	D	M	K	-	-	E	G	K	G	E	V	V	C	K	W	C	N	T	R	Y	V	F	S	E	-	E	L	E	E	L	L	K	F	K	V	D	D
M	D	V	E	F	K	C	T	C	S	R	E	R	C	A	D	A	L	K	T	L	P	D	E	E	V	D	S	I	L	A	E	D	G	E	I	D	M	H	C	D	Y	C	G	N	H	Y	L	F	N	A	M	D	I	A	E	I	R	N	-	-	N	A	S

									10										20										30										40										50										60
-	-	-	-	-	-	C	D	C	N	R	E	K	A	-	N	A	L	L	V	L	D	-	-	E	L	E	D	M	K	-	-	E	G	K	G	E	V	V	C	K	W	C	N	T	R	Y	V	F	S	E	-	E	L	E	E	L	L	K	F	K	V	D	D
M	D	V	E	F	K	C	T	C	S	R	E	R	C	A	D	A	L	K	T	L	P	D	E	E	V	D	S	I	L	A	E	D	G	E	I	D	M	H	C	D	Y	C	G	N	H	Y	L	F	N	A	M	D	I	A	E	I	R	N	-	-	N	A	S

									10										20										30										40										50										60
-	-	-	-	-	-	C	D	C	N	R	E	K	A	-	N	A	L	L	V	L	D	-	-	E	L	E	D	M	K	-	-	E	G	K	G	E	V	V	C	K	W	C	N	T	R	Y	V	F	S	E	-	E	L	E	E	L	L	K	F	K	V	D	D
M	D	V	E	F	K	C	T	C	S	R	E	R	C	A	D	A	L	K	T	L	P	D	E	E	V	D	S	I	L	A	E	D	G	E	I	D	M	H	C	D	Y	C	G	N	H	Y	L	F	N	A	M	D	I	A	E	I	R	N	-	-	N	A	S