PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1wfea1  (   8 )                                   csevnvvkerpktdehksy
d1wffa1  (   8 )    ihhlppvkaplqtkkki-------------------------------mk
d1wfpa1  (   8 )                     trggdsaaApldpp--------------kstat
                                                                      

                             60        70        80        90        100 
d1wfea1  (  27 )    sCsfkgctdvel--vaviCpyCeknFClrhrhqsdHdCe------kleva
d1wffa1  (  27 )    hCfl--cgkktglatsfeCr-cgnnFcashryaeaHgCnydyksagrryl
d1wfpa1  (  27 )    rCls--cnkkvgv-tGfkcr-cgstFCgthrypesheCqfdfkgva    
                                    bb      bb                        

                             110 
d1wfea1  (  69 )    kprmaatqklvr
d1wffa1  (  74 )    eeanp------v
d1wfpa1

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1wfea1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wfea1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	AN1-type zinc finger protein 1	AN1-like Zinc finger	Mouse (Mus musculus) [TaxId: 10090]	view
d1wffa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wffa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	ANUBL1 (AN1, ubiquitin-like, homolog)	AN1-like Zinc finger	Mouse (Mus musculus) [TaxId: 10090]	view
d1wfpa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wfpa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Zinc finger A20 and AN1 domains containing protein At1g12440	AN1-like Zinc finger	Thale cress (Arabidopsis thaliana) [TaxId: 3702]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	C	S	E	V	N	V	V	K	E	R	P	K	T	D	E	H	K	S	Y	S	C	S	F	K	G	C	T	D	V	E	L	-	-	V	A	V	I	C	P	Y	C	E	K	N	F	C	L	R	H	R	H	Q	S	D	H	D	C	E	-	-	-	-	-	-	K	L	E	V	A	K	P	R	M	A	A	T	Q	K	L	V	R
I	H	H	L	P	P	V	K	A	P	L	Q	T	K	K	K	I	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	K	H	C	F	L	-	-	C	G	K	K	T	G	L	A	T	S	F	E	C	R	-	C	G	N	N	F	C	A	S	H	R	Y	A	E	A	H	G	C	N	Y	D	Y	K	S	A	G	R	R	Y	L	E	E	A	N	P	-	-	-	-	-	-	V
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	R	G	G	D	S	A	A	A	P	L	D	P	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	S	T	A	T	R	C	L	S	-	-	C	N	K	K	V	G	V	-	T	G	F	K	C	R	-	C	G	S	T	F	C	G	T	H	R	Y	P	E	S	H	E	C	Q	F	D	F	K	G	V	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	C	S	E	V	N	V	V	K	E	R	P	K	T	D	E	H	K	S	Y	S	C	S	F	K	G	C	T	D	V	E	L	-	-	V	A	V	I	C	P	Y	C	E	K	N	F	C	L	R	H	R	H	Q	S	D	H	D	C	E	-	-	-	-	-	-	K	L	E	V	A	K	P	R	M	A	A	T	Q	K	L	V	R
I	H	H	L	P	P	V	K	A	P	L	Q	T	K	K	K	I	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	K	H	C	F	L	-	-	C	G	K	K	T	G	L	A	T	S	F	E	C	R	-	C	G	N	N	F	C	A	S	H	R	Y	A	E	A	H	G	C	N	Y	D	Y	K	S	A	G	R	R	Y	L	E	E	A	N	P	-	-	-	-	-	-	V
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	R	G	G	D	S	A	A	A	P	L	D	P	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	S	T	A	T	R	C	L	S	-	-	C	N	K	K	V	G	V	-	T	G	F	K	C	R	-	C	G	S	T	F	C	G	T	H	R	Y	P	E	S	H	E	C	Q	F	D	F	K	G	V	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	C	S	E	V	N	V	V	K	E	R	P	K	T	D	E	H	K	S	Y	S	C	S	F	K	G	C	T	D	V	E	L	-	-	V	A	V	I	C	P	Y	C	E	K	N	F	C	L	R	H	R	H	Q	S	D	H	D	C	E	-	-	-	-	-	-	K	L	E	V	A	K	P	R	M	A	A	T	Q	K	L	V	R
I	H	H	L	P	P	V	K	A	P	L	Q	T	K	K	K	I	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	K	H	C	F	L	-	-	C	G	K	K	T	G	L	A	T	S	F	E	C	R	-	C	G	N	N	F	C	A	S	H	R	Y	A	E	A	H	G	C	N	Y	D	Y	K	S	A	G	R	R	Y	L	E	E	A	N	P	-	-	-	-	-	-	V
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	R	G	G	D	S	A	A	A	P	L	D	P	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	S	T	A	T	R	C	L	S	-	-	C	N	K	K	V	G	V	-	T	G	F	K	C	R	-	C	G	S	T	F	C	G	T	H	R	Y	P	E	S	H	E	C	Q	F	D	F	K	G	V	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	C	S	E	V	N	V	V	K	E	R	P	K	T	D	E	H	K	S	Y	S	C	S	F	K	G	C	T	D	V	E	L	-	-	V	A	V	I	C	P	Y	C	E	K	N	F	C	L	R	H	R	H	Q	S	D	H	D	C	E	-	-	-	-	-	-	K	L	E	V	A	K	P	R	M	A	A	T	Q	K	L	V	R
I	H	H	L	P	P	V	K	A	P	L	Q	T	K	K	K	I	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	K	H	C	F	L	-	-	C	G	K	K	T	G	L	A	T	S	F	E	C	R	-	C	G	N	N	F	C	A	S	H	R	Y	A	E	A	H	G	C	N	Y	D	Y	K	S	A	G	R	R	Y	L	E	E	A	N	P	-	-	-	-	-	-	V
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	R	G	G	D	S	A	A	A	P	L	D	P	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	S	T	A	T	R	C	L	S	-	-	C	N	K	K	V	G	V	-	T	G	F	K	C	R	-	C	G	S	T	F	C	G	T	H	R	Y	P	E	S	H	E	C	Q	F	D	F	K	G	V	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-