PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2d9ba1  (   8 )    ms----vdaveietlrktvedyFcfCYGkalgkstvvpvpyekMlrdqsA
d2dn5a1  (   8 )                  lreqvkelFnekYGealglnrpvlvpyklirdspda
d2dzqa1  (   8 )                  lrkqvellFntrYAkaigisepvkvpyskFlmhpee
d2ejea1  (   8 )    ddnerlskvekarqlreqvndlFSrkFGeaigmgfpvkvpyrkitinpgc
                                   aaaaaaaaaaaaaaa          aaaaaa    

                             60        70        80        90        100 
d2d9ba1  (  54 )    vvvqglpegvaFkhPenYdlatlkwilenkagisFiikrpflepkkhvgg
d2dn5a1  (  44 )    vevtglpddipfrnPntYdihrlekilkarehvrMviinq          
d2dzqa1  (  44 )    lfvvglpegislrrPncfgiaklrkileasnsiqFvikrp--------el
d2ejea1  (  58 )    vvvdgmppgvsfkapsyleissMrrildsaefikFtvirpfp-------g
                    bbbb               aaaaaaaaa     bbbb             

                            
d2d9ba1                     
d2dn5a1                     
d2dzqa1  (  86 )    ltegvkep
d2ejea1  ( 101 )    lvinnqlv

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2d9ba1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2d9ba1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view
d2dn5a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2dn5a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view
d2dzqa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2dzqa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view
d2ejea1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ejea1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	S	-	-	-	-	V	D	A	V	E	I	E	T	L	R	K	T	V	E	D	Y	F	C	F	C	Y	G	K	A	L	G	K	S	T	V	V	P	V	P	Y	E	K	M	L	R	D	Q	S	A	V	V	V	Q	G	L	P	E	G	V	A	F	K	H	P	E	N	Y	D	L	A	T	L	K	W	I	L	E	N	K	A	G	I	S	F	I	I	K	R	P	F	L	E	P	K	K	H	V	G	G	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	R	E	Q	V	K	E	L	F	N	E	K	Y	G	E	A	L	G	L	N	R	P	V	L	V	P	Y	K	L	I	R	D	S	P	D	A	V	E	V	T	G	L	P	D	D	I	P	F	R	N	P	N	T	Y	D	I	H	R	L	E	K	I	L	K	A	R	E	H	V	R	M	V	I	I	N	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	R	K	Q	V	E	L	L	F	N	T	R	Y	A	K	A	I	G	I	S	E	P	V	K	V	P	Y	S	K	F	L	M	H	P	E	E	L	F	V	V	G	L	P	E	G	I	S	L	R	R	P	N	C	F	G	I	A	K	L	R	K	I	L	E	A	S	N	S	I	Q	F	V	I	K	R	P	-	-	-	-	-	-	-	-	E	L	L	T	E	G	V	K	E	P
D	D	N	E	R	L	S	K	V	E	K	A	R	Q	L	R	E	Q	V	N	D	L	F	S	R	K	F	G	E	A	I	G	M	G	F	P	V	K	V	P	Y	R	K	I	T	I	N	P	G	C	V	V	V	D	G	M	P	P	G	V	S	F	K	A	P	S	Y	L	E	I	S	S	M	R	R	I	L	D	S	A	E	F	I	K	F	T	V	I	R	P	F	P	-	-	-	-	-	-	-	G	L	V	I	N	N	Q	L	V

Member	Chain	UniProtKB	GO term

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M	S	-	-	-	-	V	D	A	V	E	I	E	T	L	R	K	T	V	E	D	Y	F	C	F	C	Y	G	K	A	L	G	K	S	T	V	V	P	V	P	Y	E	K	M	L	R	D	Q	S	A	V	V	V	Q	G	L	P	E	G	V	A	F	K	H	P	E	N	Y	D	L	A	T	L	K	W	I	L	E	N	K	A	G	I	S	F	I	I	K	R	P	F	L	E	P	K	K	H	V	G	G	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	R	E	Q	V	K	E	L	F	N	E	K	Y	G	E	A	L	G	L	N	R	P	V	L	V	P	Y	K	L	I	R	D	S	P	D	A	V	E	V	T	G	L	P	D	D	I	P	F	R	N	P	N	T	Y	D	I	H	R	L	E	K	I	L	K	A	R	E	H	V	R	M	V	I	I	N	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	R	K	Q	V	E	L	L	F	N	T	R	Y	A	K	A	I	G	I	S	E	P	V	K	V	P	Y	S	K	F	L	M	H	P	E	E	L	F	V	V	G	L	P	E	G	I	S	L	R	R	P	N	C	F	G	I	A	K	L	R	K	I	L	E	A	S	N	S	I	Q	F	V	I	K	R	P	-	-	-	-	-	-	-	-	E	L	L	T	E	G	V	K	E	P
D	D	N	E	R	L	S	K	V	E	K	A	R	Q	L	R	E	Q	V	N	D	L	F	S	R	K	F	G	E	A	I	G	M	G	F	P	V	K	V	P	Y	R	K	I	T	I	N	P	G	C	V	V	V	D	G	M	P	P	G	V	S	F	K	A	P	S	Y	L	E	I	S	S	M	R	R	I	L	D	S	A	E	F	I	K	F	T	V	I	R	P	F	P	-	-	-	-	-	-	-	G	L	V	I	N	N	Q	L	V

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M	S	-	-	-	-	V	D	A	V	E	I	E	T	L	R	K	T	V	E	D	Y	F	C	F	C	Y	G	K	A	L	G	K	S	T	V	V	P	V	P	Y	E	K	M	L	R	D	Q	S	A	V	V	V	Q	G	L	P	E	G	V	A	F	K	H	P	E	N	Y	D	L	A	T	L	K	W	I	L	E	N	K	A	G	I	S	F	I	I	K	R	P	F	L	E	P	K	K	H	V	G	G	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	R	E	Q	V	K	E	L	F	N	E	K	Y	G	E	A	L	G	L	N	R	P	V	L	V	P	Y	K	L	I	R	D	S	P	D	A	V	E	V	T	G	L	P	D	D	I	P	F	R	N	P	N	T	Y	D	I	H	R	L	E	K	I	L	K	A	R	E	H	V	R	M	V	I	I	N	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	R	K	Q	V	E	L	L	F	N	T	R	Y	A	K	A	I	G	I	S	E	P	V	K	V	P	Y	S	K	F	L	M	H	P	E	E	L	F	V	V	G	L	P	E	G	I	S	L	R	R	P	N	C	F	G	I	A	K	L	R	K	I	L	E	A	S	N	S	I	Q	F	V	I	K	R	P	-	-	-	-	-	-	-	-	E	L	L	T	E	G	V	K	E	P
D	D	N	E	R	L	S	K	V	E	K	A	R	Q	L	R	E	Q	V	N	D	L	F	S	R	K	F	G	E	A	I	G	M	G	F	P	V	K	V	P	Y	R	K	I	T	I	N	P	G	C	V	V	V	D	G	M	P	P	G	V	S	F	K	A	P	S	Y	L	E	I	S	S	M	R	R	I	L	D	S	A	E	F	I	K	F	T	V	I	R	P	F	P	-	-	-	-	-	-	-	G	L	V	I	N	N	Q	L	V

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M	S	-	-	-	-	V	D	A	V	E	I	E	T	L	R	K	T	V	E	D	Y	F	C	F	C	Y	G	K	A	L	G	K	S	T	V	V	P	V	P	Y	E	K	M	L	R	D	Q	S	A	V	V	V	Q	G	L	P	E	G	V	A	F	K	H	P	E	N	Y	D	L	A	T	L	K	W	I	L	E	N	K	A	G	I	S	F	I	I	K	R	P	F	L	E	P	K	K	H	V	G	G	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	R	E	Q	V	K	E	L	F	N	E	K	Y	G	E	A	L	G	L	N	R	P	V	L	V	P	Y	K	L	I	R	D	S	P	D	A	V	E	V	T	G	L	P	D	D	I	P	F	R	N	P	N	T	Y	D	I	H	R	L	E	K	I	L	K	A	R	E	H	V	R	M	V	I	I	N	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	R	K	Q	V	E	L	L	F	N	T	R	Y	A	K	A	I	G	I	S	E	P	V	K	V	P	Y	S	K	F	L	M	H	P	E	E	L	F	V	V	G	L	P	E	G	I	S	L	R	R	P	N	C	F	G	I	A	K	L	R	K	I	L	E	A	S	N	S	I	Q	F	V	I	K	R	P	-	-	-	-	-	-	-	-	E	L	L	T	E	G	V	K	E	P
D	D	N	E	R	L	S	K	V	E	K	A	R	Q	L	R	E	Q	V	N	D	L	F	S	R	K	F	G	E	A	I	G	M	G	F	P	V	K	V	P	Y	R	K	I	T	I	N	P	G	C	V	V	V	D	G	M	P	P	G	V	S	F	K	A	P	S	Y	L	E	I	S	S	M	R	R	I	L	D	S	A	E	F	I	K	F	T	V	I	R	P	F	P	-	-	-	-	-	-	-	G	L	V	I	N	N	Q	L	V