PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1vpqa1  (   1 )    mvyVGTsgFsfedWgvvYpehlpsFLkyYwavlgFrIVELnftyytqpsw
d1ztva1  (   1 )    miRLGLtsfs--eHdyLtg----stLyeYAS--hLpLVEMdtAyygIPpk
                     bbbbb                   aaaa       bbbb          

                             60        70        80        90        100 
d1vpqa1  (  55 )    -sFvqm-LTppdFyFTVkTpgsVTh--vlwkeg-kdPedMenft-qIepL
d1ztva1  (  46 )    erVaewvaVpenFrFVMkVYsGIScqgewqtyyaseeeMItaFlesMapL
                      aaaa       bbbbb                    aaaaa    aaa

                             110       120       130       140       150 
d1vpqa1  ( 103 )    ieeqrLkMTLAQFpfsFkfsrnveyLekLresYpyeLAVEFrhysWdr--
d1ztva1  (  97 )    ies-kLFAFLVqFsgtfgct-nvayLqkIrhWFdlpIAIELrnnsWYqpn
                    aa   bbbbbbb          aaaaaaaaaa    bbbb   333    

                             160       170       180       190       200 
d1vpqa1  ( 152 )    --eeTYefLrnhgITFVVVDEPklp-gLFpyrpitTtd-yAYFRFHGrne
d1ztva1  ( 149 )    fvkqML-fM-enqFSLVIVDePqIptnpVpfypyvTnpnlVLFRFHGrna
                      aaa         bb bbb                    bbbbb     

                             210       220       230       240       250 
d1vpqa1  ( 199 )    --Wf--eaegeerydylYs-eeL-tLfdVvlsvkeTYVFFnNCykGqAAi
d1ztva1  ( 199 )    agwlandaewrkrtlyhYntqeIadLSaVmsqeAeVGVIFnNnsggdAAe
                             3                         bbbbb       aaa

                             260       270 
d1vpqa1  ( 249 )    NAlqFkkmlee          
d1ztva1  ( 254 )    NAlqMq-vlnlsddlnpkqld
                    aaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1vpqa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vpqa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein TM1631	TM1631-like	Thermotoga maritima [TaxId: 2336]		view
d1ztva1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ztva1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	TM1631-like	Enterococcus faecalis [TaxId: 226185]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	V	Y	V	G	T	S	G	F	S	F	E	D	W	G	V	V	Y	P	E	H	L	P	S	F	L	K	Y	Y	W	A	V	L	G	F	R	I	V	E	L	N	F	T	Y	Y	T	Q	P	S	W	-	S	F	V	Q	M	-	L	T	P	P	D	F	Y	F	T	V	K	T	P	G	S	V	T	H	-	-	V	L	W	K	E	G	-	K	D	P	E	D	M	E	N	F	T	-	Q	I	E	P	L	I	E	E	Q	R	L	K	M	T	L	A	Q	F	P	F	S	F	K	F	S	R	N	V	E	Y	L	E	K	L	R	E	S	Y	P	Y	E	L	A	V	E	F	R	H	Y	S	W	D	R	-	-	-	-	E	E	T	Y	E	F	L	R	N	H	G	I	T	F	V	V	V	D	E	P	K	L	P	-	G	L	F	P	Y	R	P	I	T	T	T	D	-	Y	A	Y	F	R	F	H	G	R	N	E	-	-	W	F	-	-	E	A	E	G	E	E	R	Y	D	Y	L	Y	S	-	E	E	L	-	T	L	F	D	V	V	L	S	V	K	E	T	Y	V	F	F	N	N	C	Y	K	G	Q	A	A	I	N	A	L	Q	F	K	K	M	L	E	E	-	-	-	-	-	-	-	-	-	-
M	I	R	L	G	L	T	S	F	S	-	-	E	H	D	Y	L	T	G	-	-	-	-	S	T	L	Y	E	Y	A	S	-	-	H	L	P	L	V	E	M	D	T	A	Y	Y	G	I	P	P	K	E	R	V	A	E	W	V	A	V	P	E	N	F	R	F	V	M	K	V	Y	S	G	I	S	C	Q	G	E	W	Q	T	Y	Y	A	S	E	E	E	M	I	T	A	F	L	E	S	M	A	P	L	I	E	S	-	K	L	F	A	F	L	V	Q	F	S	G	T	F	G	C	T	-	N	V	A	Y	L	Q	K	I	R	H	W	F	D	L	P	I	A	I	E	L	R	N	N	S	W	Y	Q	P	N	F	V	K	Q	M	L	-	F	M	-	E	N	Q	F	S	L	V	I	V	D	E	P	Q	I	P	T	N	P	V	P	F	Y	P	Y	V	T	N	P	N	L	V	L	F	R	F	H	G	R	N	A	A	G	W	L	A	N	D	A	E	W	R	K	R	T	L	Y	H	Y	N	T	Q	E	I	A	D	L	S	A	V	M	S	Q	E	A	E	V	G	V	I	F	N	N	N	S	G	G	D	A	A	E	N	A	L	Q	M	Q	-	V	L	N	L	S	D	D	L	N	P	K	Q	L	D

Member	Chain	UniProtKB	GO term

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M	V	Y	V	G	T	S	G	F	S	F	E	D	W	G	V	V	Y	P	E	H	L	P	S	F	L	K	Y	Y	W	A	V	L	G	F	R	I	V	E	L	N	F	T	Y	Y	T	Q	P	S	W	-	S	F	V	Q	M	-	L	T	P	P	D	F	Y	F	T	V	K	T	P	G	S	V	T	H	-	-	V	L	W	K	E	G	-	K	D	P	E	D	M	E	N	F	T	-	Q	I	E	P	L	I	E	E	Q	R	L	K	M	T	L	A	Q	F	P	F	S	F	K	F	S	R	N	V	E	Y	L	E	K	L	R	E	S	Y	P	Y	E	L	A	V	E	F	R	H	Y	S	W	D	R	-	-	-	-	E	E	T	Y	E	F	L	R	N	H	G	I	T	F	V	V	V	D	E	P	K	L	P	-	G	L	F	P	Y	R	P	I	T	T	T	D	-	Y	A	Y	F	R	F	H	G	R	N	E	-	-	W	F	-	-	E	A	E	G	E	E	R	Y	D	Y	L	Y	S	-	E	E	L	-	T	L	F	D	V	V	L	S	V	K	E	T	Y	V	F	F	N	N	C	Y	K	G	Q	A	A	I	N	A	L	Q	F	K	K	M	L	E	E	-	-	-	-	-	-	-	-	-	-
M	I	R	L	G	L	T	S	F	S	-	-	E	H	D	Y	L	T	G	-	-	-	-	S	T	L	Y	E	Y	A	S	-	-	H	L	P	L	V	E	M	D	T	A	Y	Y	G	I	P	P	K	E	R	V	A	E	W	V	A	V	P	E	N	F	R	F	V	M	K	V	Y	S	G	I	S	C	Q	G	E	W	Q	T	Y	Y	A	S	E	E	E	M	I	T	A	F	L	E	S	M	A	P	L	I	E	S	-	K	L	F	A	F	L	V	Q	F	S	G	T	F	G	C	T	-	N	V	A	Y	L	Q	K	I	R	H	W	F	D	L	P	I	A	I	E	L	R	N	N	S	W	Y	Q	P	N	F	V	K	Q	M	L	-	F	M	-	E	N	Q	F	S	L	V	I	V	D	E	P	Q	I	P	T	N	P	V	P	F	Y	P	Y	V	T	N	P	N	L	V	L	F	R	F	H	G	R	N	A	A	G	W	L	A	N	D	A	E	W	R	K	R	T	L	Y	H	Y	N	T	Q	E	I	A	D	L	S	A	V	M	S	Q	E	A	E	V	G	V	I	F	N	N	N	S	G	G	D	A	A	E	N	A	L	Q	M	Q	-	V	L	N	L	S	D	D	L	N	P	K	Q	L	D

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M	V	Y	V	G	T	S	G	F	S	F	E	D	W	G	V	V	Y	P	E	H	L	P	S	F	L	K	Y	Y	W	A	V	L	G	F	R	I	V	E	L	N	F	T	Y	Y	T	Q	P	S	W	-	S	F	V	Q	M	-	L	T	P	P	D	F	Y	F	T	V	K	T	P	G	S	V	T	H	-	-	V	L	W	K	E	G	-	K	D	P	E	D	M	E	N	F	T	-	Q	I	E	P	L	I	E	E	Q	R	L	K	M	T	L	A	Q	F	P	F	S	F	K	F	S	R	N	V	E	Y	L	E	K	L	R	E	S	Y	P	Y	E	L	A	V	E	F	R	H	Y	S	W	D	R	-	-	-	-	E	E	T	Y	E	F	L	R	N	H	G	I	T	F	V	V	V	D	E	P	K	L	P	-	G	L	F	P	Y	R	P	I	T	T	T	D	-	Y	A	Y	F	R	F	H	G	R	N	E	-	-	W	F	-	-	E	A	E	G	E	E	R	Y	D	Y	L	Y	S	-	E	E	L	-	T	L	F	D	V	V	L	S	V	K	E	T	Y	V	F	F	N	N	C	Y	K	G	Q	A	A	I	N	A	L	Q	F	K	K	M	L	E	E	-	-	-	-	-	-	-	-	-	-
M	I	R	L	G	L	T	S	F	S	-	-	E	H	D	Y	L	T	G	-	-	-	-	S	T	L	Y	E	Y	A	S	-	-	H	L	P	L	V	E	M	D	T	A	Y	Y	G	I	P	P	K	E	R	V	A	E	W	V	A	V	P	E	N	F	R	F	V	M	K	V	Y	S	G	I	S	C	Q	G	E	W	Q	T	Y	Y	A	S	E	E	E	M	I	T	A	F	L	E	S	M	A	P	L	I	E	S	-	K	L	F	A	F	L	V	Q	F	S	G	T	F	G	C	T	-	N	V	A	Y	L	Q	K	I	R	H	W	F	D	L	P	I	A	I	E	L	R	N	N	S	W	Y	Q	P	N	F	V	K	Q	M	L	-	F	M	-	E	N	Q	F	S	L	V	I	V	D	E	P	Q	I	P	T	N	P	V	P	F	Y	P	Y	V	T	N	P	N	L	V	L	F	R	F	H	G	R	N	A	A	G	W	L	A	N	D	A	E	W	R	K	R	T	L	Y	H	Y	N	T	Q	E	I	A	D	L	S	A	V	M	S	Q	E	A	E	V	G	V	I	F	N	N	N	S	G	G	D	A	A	E	N	A	L	Q	M	Q	-	V	L	N	L	S	D	D	L	N	P	K	Q	L	D

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M	V	Y	V	G	T	S	G	F	S	F	E	D	W	G	V	V	Y	P	E	H	L	P	S	F	L	K	Y	Y	W	A	V	L	G	F	R	I	V	E	L	N	F	T	Y	Y	T	Q	P	S	W	-	S	F	V	Q	M	-	L	T	P	P	D	F	Y	F	T	V	K	T	P	G	S	V	T	H	-	-	V	L	W	K	E	G	-	K	D	P	E	D	M	E	N	F	T	-	Q	I	E	P	L	I	E	E	Q	R	L	K	M	T	L	A	Q	F	P	F	S	F	K	F	S	R	N	V	E	Y	L	E	K	L	R	E	S	Y	P	Y	E	L	A	V	E	F	R	H	Y	S	W	D	R	-	-	-	-	E	E	T	Y	E	F	L	R	N	H	G	I	T	F	V	V	V	D	E	P	K	L	P	-	G	L	F	P	Y	R	P	I	T	T	T	D	-	Y	A	Y	F	R	F	H	G	R	N	E	-	-	W	F	-	-	E	A	E	G	E	E	R	Y	D	Y	L	Y	S	-	E	E	L	-	T	L	F	D	V	V	L	S	V	K	E	T	Y	V	F	F	N	N	C	Y	K	G	Q	A	A	I	N	A	L	Q	F	K	K	M	L	E	E	-	-	-	-	-	-	-	-	-	-
M	I	R	L	G	L	T	S	F	S	-	-	E	H	D	Y	L	T	G	-	-	-	-	S	T	L	Y	E	Y	A	S	-	-	H	L	P	L	V	E	M	D	T	A	Y	Y	G	I	P	P	K	E	R	V	A	E	W	V	A	V	P	E	N	F	R	F	V	M	K	V	Y	S	G	I	S	C	Q	G	E	W	Q	T	Y	Y	A	S	E	E	E	M	I	T	A	F	L	E	S	M	A	P	L	I	E	S	-	K	L	F	A	F	L	V	Q	F	S	G	T	F	G	C	T	-	N	V	A	Y	L	Q	K	I	R	H	W	F	D	L	P	I	A	I	E	L	R	N	N	S	W	Y	Q	P	N	F	V	K	Q	M	L	-	F	M	-	E	N	Q	F	S	L	V	I	V	D	E	P	Q	I	P	T	N	P	V	P	F	Y	P	Y	V	T	N	P	N	L	V	L	F	R	F	H	G	R	N	A	A	G	W	L	A	N	D	A	E	W	R	K	R	T	L	Y	H	Y	N	T	Q	E	I	A	D	L	S	A	V	M	S	Q	E	A	E	V	G	V	I	F	N	N	N	S	G	G	D	A	A	E	N	A	L	Q	M	Q	-	V	L	N	L	S	D	D	L	N	P	K	Q	L	D