PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3og2a3  ( 572 )    rnsaynywvptlpgsgkqsayGsslm--npdsViIngGylIrsVaikgna
d5ifpa3  ( 567 )    rnsaynywvpqLatdg--tspgfstpekvassIiVkAgylVrtAylkgsG
                       333bb                         bbb   bbbbbbbb  b

                             60        70        80        90        
d3og2a3  ( 620 )    LsVqAdfnvttpLeIigipkgIskLaVngkelgysvselgdWiAhPaie
d5ifpa3  ( 615 )    LyLtAdfnattsVeVigVpstAknLfIngdktshtvdkngiwsatvdyn
                    bbbbbb      bbbb       bbbb  bbb  bb     bbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3og2a3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3og2a3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Trichoderma reesei [TaxId: 51453]		view
d5ifpa3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5ifpa3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Aspergillus niger [TaxId: 425011]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90
R	N	S	A	Y	N	Y	W	V	P	T	L	P	G	S	G	K	Q	S	A	Y	G	S	S	L	M	-	-	N	P	D	S	V	I	I	N	G	G	Y	L	I	R	S	V	A	I	K	G	N	A	L	S	V	Q	A	D	F	N	V	T	T	P	L	E	I	I	G	I	P	K	G	I	S	K	L	A	V	N	G	K	E	L	G	Y	S	V	S	E	L	G	D	W	I	A	H	P	A	I	E
R	N	S	A	Y	N	Y	W	V	P	Q	L	A	T	D	G	-	-	T	S	P	G	F	S	T	P	E	K	V	A	S	S	I	I	V	K	A	G	Y	L	V	R	T	A	Y	L	K	G	S	G	L	Y	L	T	A	D	F	N	A	T	T	S	V	E	V	I	G	V	P	S	T	A	K	N	L	F	I	N	G	D	K	T	S	H	T	V	D	K	N	G	I	W	S	A	T	V	D	Y	N

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90
R	N	S	A	Y	N	Y	W	V	P	T	L	P	G	S	G	K	Q	S	A	Y	G	S	S	L	M	-	-	N	P	D	S	V	I	I	N	G	G	Y	L	I	R	S	V	A	I	K	G	N	A	L	S	V	Q	A	D	F	N	V	T	T	P	L	E	I	I	G	I	P	K	G	I	S	K	L	A	V	N	G	K	E	L	G	Y	S	V	S	E	L	G	D	W	I	A	H	P	A	I	E
R	N	S	A	Y	N	Y	W	V	P	Q	L	A	T	D	G	-	-	T	S	P	G	F	S	T	P	E	K	V	A	S	S	I	I	V	K	A	G	Y	L	V	R	T	A	Y	L	K	G	S	G	L	Y	L	T	A	D	F	N	A	T	T	S	V	E	V	I	G	V	P	S	T	A	K	N	L	F	I	N	G	D	K	T	S	H	T	V	D	K	N	G	I	W	S	A	T	V	D	Y	N

									10										20										30										40										50										60										70										80										90
R	N	S	A	Y	N	Y	W	V	P	T	L	P	G	S	G	K	Q	S	A	Y	G	S	S	L	M	-	-	N	P	D	S	V	I	I	N	G	G	Y	L	I	R	S	V	A	I	K	G	N	A	L	S	V	Q	A	D	F	N	V	T	T	P	L	E	I	I	G	I	P	K	G	I	S	K	L	A	V	N	G	K	E	L	G	Y	S	V	S	E	L	G	D	W	I	A	H	P	A	I	E
R	N	S	A	Y	N	Y	W	V	P	Q	L	A	T	D	G	-	-	T	S	P	G	F	S	T	P	E	K	V	A	S	S	I	I	V	K	A	G	Y	L	V	R	T	A	Y	L	K	G	S	G	L	Y	L	T	A	D	F	N	A	T	T	S	V	E	V	I	G	V	P	S	T	A	K	N	L	F	I	N	G	D	K	T	S	H	T	V	D	K	N	G	I	W	S	A	T	V	D	Y	N

									10										20										30										40										50										60										70										80										90
R	N	S	A	Y	N	Y	W	V	P	T	L	P	G	S	G	K	Q	S	A	Y	G	S	S	L	M	-	-	N	P	D	S	V	I	I	N	G	G	Y	L	I	R	S	V	A	I	K	G	N	A	L	S	V	Q	A	D	F	N	V	T	T	P	L	E	I	I	G	I	P	K	G	I	S	K	L	A	V	N	G	K	E	L	G	Y	S	V	S	E	L	G	D	W	I	A	H	P	A	I	E
R	N	S	A	Y	N	Y	W	V	P	Q	L	A	T	D	G	-	-	T	S	P	G	F	S	T	P	E	K	V	A	S	S	I	I	V	K	A	G	Y	L	V	R	T	A	Y	L	K	G	S	G	L	Y	L	T	A	D	F	N	A	T	T	S	V	E	V	I	G	V	P	S	T	A	K	N	L	F	I	N	G	D	K	T	S	H	T	V	D	K	N	G	I	W	S	A	T	V	D	Y	N