PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1kl9a1  (  89 )    vsp-eaikcedkftks-tVysIL-hVaevleytdqlesLfqrTAwvFddk
d2a19a2  (  89 )    vssediikceekyqksktVhsiLryCAekfqi--pleeLyktIAwpLsrk
d3cw2c2  (  85 )    vtdderrkknlqwkkiqrLdkiLelVSqklkl--sekdAweqVAwkLeak
                         aaaaaaaaaa   aaaa   aaaa      aaaaaaa aaaaa  

                             60        70        80        90       
d1kl9a1  ( 141 )    ykrpgyGAydAF-hAvs-dpsiLdsLdln----devLinNInrr    
d2a19a2  ( 137 )    fg----hAyeAFklSii-detVWegIeppskdVldeLknyisk     
d3cw2c2  ( 133 )    yg----dPitAIekAvkegekiLidAgVpe-iwvkpLleEAskhaeer
                           aaaa                         aaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1kl9a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1kl9a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2	eIF2alpha middle domain-like	Human (Homo sapiens) [TaxId: 9606]	view
d2a19a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2a19a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view
d3cw2c2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3cw2c2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2	eIF2alpha middle domain-like	Sulfolobus solfataricus [TaxId: 2287]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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V	S	P	-	E	A	I	K	C	E	D	K	F	T	K	S	-	T	V	Y	S	I	L	-	H	V	A	E	V	L	E	Y	T	D	Q	L	E	S	L	F	Q	R	T	A	W	V	F	D	D	K	Y	K	R	P	G	Y	G	A	Y	D	A	F	-	H	A	V	S	-	D	P	S	I	L	D	S	L	D	L	N	-	-	-	-	D	E	V	L	I	N	N	I	N	R	R	-	-	-	-
V	S	S	E	D	I	I	K	C	E	E	K	Y	Q	K	S	K	T	V	H	S	I	L	R	Y	C	A	E	K	F	Q	I	-	-	P	L	E	E	L	Y	K	T	I	A	W	P	L	S	R	K	F	G	-	-	-	-	H	A	Y	E	A	F	K	L	S	I	I	-	D	E	T	V	W	E	G	I	E	P	P	S	K	D	V	L	D	E	L	K	N	Y	I	S	K	-	-	-	-	-
V	T	D	D	E	R	R	K	K	N	L	Q	W	K	K	I	Q	R	L	D	K	I	L	E	L	V	S	Q	K	L	K	L	-	-	S	E	K	D	A	W	E	Q	V	A	W	K	L	E	A	K	Y	G	-	-	-	-	D	P	I	T	A	I	E	K	A	V	K	E	G	E	K	I	L	I	D	A	G	V	P	E	-	I	W	V	K	P	L	L	E	E	A	S	K	H	A	E	E	R

Member	Chain	UniProtKB	GO term
d1kl9a1	A	P05198	GO:0003676
d1kl9a1	A	P05198	GO:0003723
d1kl9a1	A	P05198	GO:0003743

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V	S	S	E	D	I	I	K	C	E	E	K	Y	Q	K	S	K	T	V	H	S	I	L	R	Y	C	A	E	K	F	Q	I	-	-	P	L	E	E	L	Y	K	T	I	A	W	P	L	S	R	K	F	G	-	-	-	-	H	A	Y	E	A	F	K	L	S	I	I	-	D	E	T	V	W	E	G	I	E	P	P	S	K	D	V	L	D	E	L	K	N	Y	I	S	K	-	-	-	-	-
V	T	D	D	E	R	R	K	K	N	L	Q	W	K	K	I	Q	R	L	D	K	I	L	E	L	V	S	Q	K	L	K	L	-	-	S	E	K	D	A	W	E	Q	V	A	W	K	L	E	A	K	Y	G	-	-	-	-	D	P	I	T	A	I	E	K	A	V	K	E	G	E	K	I	L	I	D	A	G	V	P	E	-	I	W	V	K	P	L	L	E	E	A	S	K	H	A	E	E	R

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V	S	P	-	E	A	I	K	C	E	D	K	F	T	K	S	-	T	V	Y	S	I	L	-	H	V	A	E	V	L	E	Y	T	D	Q	L	E	S	L	F	Q	R	T	A	W	V	F	D	D	K	Y	K	R	P	G	Y	G	A	Y	D	A	F	-	H	A	V	S	-	D	P	S	I	L	D	S	L	D	L	N	-	-	-	-	D	E	V	L	I	N	N	I	N	R	R	-	-	-	-
V	S	S	E	D	I	I	K	C	E	E	K	Y	Q	K	S	K	T	V	H	S	I	L	R	Y	C	A	E	K	F	Q	I	-	-	P	L	E	E	L	Y	K	T	I	A	W	P	L	S	R	K	F	G	-	-	-	-	H	A	Y	E	A	F	K	L	S	I	I	-	D	E	T	V	W	E	G	I	E	P	P	S	K	D	V	L	D	E	L	K	N	Y	I	S	K	-	-	-	-	-
V	T	D	D	E	R	R	K	K	N	L	Q	W	K	K	I	Q	R	L	D	K	I	L	E	L	V	S	Q	K	L	K	L	-	-	S	E	K	D	A	W	E	Q	V	A	W	K	L	E	A	K	Y	G	-	-	-	-	D	P	I	T	A	I	E	K	A	V	K	E	G	E	K	I	L	I	D	A	G	V	P	E	-	I	W	V	K	P	L	L	E	E	A	S	K	H	A	E	E	R

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V	S	P	-	E	A	I	K	C	E	D	K	F	T	K	S	-	T	V	Y	S	I	L	-	H	V	A	E	V	L	E	Y	T	D	Q	L	E	S	L	F	Q	R	T	A	W	V	F	D	D	K	Y	K	R	P	G	Y	G	A	Y	D	A	F	-	H	A	V	S	-	D	P	S	I	L	D	S	L	D	L	N	-	-	-	-	D	E	V	L	I	N	N	I	N	R	R	-	-	-	-
V	S	S	E	D	I	I	K	C	E	E	K	Y	Q	K	S	K	T	V	H	S	I	L	R	Y	C	A	E	K	F	Q	I	-	-	P	L	E	E	L	Y	K	T	I	A	W	P	L	S	R	K	F	G	-	-	-	-	H	A	Y	E	A	F	K	L	S	I	I	-	D	E	T	V	W	E	G	I	E	P	P	S	K	D	V	L	D	E	L	K	N	Y	I	S	K	-	-	-	-	-
V	T	D	D	E	R	R	K	K	N	L	Q	W	K	K	I	Q	R	L	D	K	I	L	E	L	V	S	Q	K	L	K	L	-	-	S	E	K	D	A	W	E	Q	V	A	W	K	L	E	A	K	Y	G	-	-	-	-	D	P	I	T	A	I	E	K	A	V	K	E	G	E	K	I	L	I	D	A	G	V	P	E	-	I	W	V	K	P	L	L	E	E	A	S	K	H	A	E	E	R