PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1vcta2  ( 108 )    lh-pviketilegeeIigkIqVypeSvIvgktlgeldLatntgVwIiaVr
d2aefa2  ( 245 )    dgyeamfvqdvlatrrmvevpIp-gSkLegvsvldAdIhdvtgViiiGVg
                       aaaaaaaaa   bbbbbb           aaaa aaaaa  bbbbbb

                             60        70        80        90    
d1vcta2  ( 157 )    rgkrwifgPnenfkIragDvLiGrGtrtsIdhLkeIArGairvig
d2aefa2  ( 298 )    rg-eliidPp-dysF-agDiIlGiGkp-ei-eLknyIsa      
                        bbb            bbbbbb        aaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1vcta2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vcta2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein PH0236, C-terminal domain	TrkA C-terminal domain-like	Pyrococcus horikoshii [TaxId: 53953]		view
d2aefa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2aefa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Potassium channel-related protein MthK, C-terminal domain	TrkA C-terminal domain-like	Methanothermobacter thermautotrophicus [TaxId: 145262]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90
L	H	-	P	V	I	K	E	T	I	L	E	G	E	E	I	I	G	K	I	Q	V	Y	P	E	S	V	I	V	G	K	T	L	G	E	L	D	L	A	T	N	T	G	V	W	I	I	A	V	R	R	G	K	R	W	I	F	G	P	N	E	N	F	K	I	R	A	G	D	V	L	I	G	R	G	T	R	T	S	I	D	H	L	K	E	I	A	R	G	A	I	R	V	I	G
D	G	Y	E	A	M	F	V	Q	D	V	L	A	T	R	R	M	V	E	V	P	I	P	-	G	S	K	L	E	G	V	S	V	L	D	A	D	I	H	D	V	T	G	V	I	I	I	G	V	G	R	G	-	E	L	I	I	D	P	P	-	D	Y	S	F	-	A	G	D	I	I	L	G	I	G	K	P	-	E	I	-	E	L	K	N	Y	I	S	A	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1vcta2	A	O57975	GO:0006813
d1vcta2	A	O57975	GO:0008324
d1vcta2	A	O57975	GO:0046872
d1vcta2	A	O57975	GO:0098655
d1vcta2	A	O57975	GO:0006813
d1vcta2	A	O57975	GO:0008324
d1vcta2	A	O57975	GO:0046872
d1vcta2	A	O57975	GO:0098655
d1vcta2	A	O57975	GO:0006813
d1vcta2	A	O57975	GO:0008324
d1vcta2	A	O57975	GO:0046872
d1vcta2	A	O57975	GO:0098655

									10										20										30										40										50										60										70										80										90
L	H	-	P	V	I	K	E	T	I	L	E	G	E	E	I	I	G	K	I	Q	V	Y	P	E	S	V	I	V	G	K	T	L	G	E	L	D	L	A	T	N	T	G	V	W	I	I	A	V	R	R	G	K	R	W	I	F	G	P	N	E	N	F	K	I	R	A	G	D	V	L	I	G	R	G	T	R	T	S	I	D	H	L	K	E	I	A	R	G	A	I	R	V	I	G
D	G	Y	E	A	M	F	V	Q	D	V	L	A	T	R	R	M	V	E	V	P	I	P	-	G	S	K	L	E	G	V	S	V	L	D	A	D	I	H	D	V	T	G	V	I	I	I	G	V	G	R	G	-	E	L	I	I	D	P	P	-	D	Y	S	F	-	A	G	D	I	I	L	G	I	G	K	P	-	E	I	-	E	L	K	N	Y	I	S	A	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90
L	H	-	P	V	I	K	E	T	I	L	E	G	E	E	I	I	G	K	I	Q	V	Y	P	E	S	V	I	V	G	K	T	L	G	E	L	D	L	A	T	N	T	G	V	W	I	I	A	V	R	R	G	K	R	W	I	F	G	P	N	E	N	F	K	I	R	A	G	D	V	L	I	G	R	G	T	R	T	S	I	D	H	L	K	E	I	A	R	G	A	I	R	V	I	G
D	G	Y	E	A	M	F	V	Q	D	V	L	A	T	R	R	M	V	E	V	P	I	P	-	G	S	K	L	E	G	V	S	V	L	D	A	D	I	H	D	V	T	G	V	I	I	I	G	V	G	R	G	-	E	L	I	I	D	P	P	-	D	Y	S	F	-	A	G	D	I	I	L	G	I	G	K	P	-	E	I	-	E	L	K	N	Y	I	S	A	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90
L	H	-	P	V	I	K	E	T	I	L	E	G	E	E	I	I	G	K	I	Q	V	Y	P	E	S	V	I	V	G	K	T	L	G	E	L	D	L	A	T	N	T	G	V	W	I	I	A	V	R	R	G	K	R	W	I	F	G	P	N	E	N	F	K	I	R	A	G	D	V	L	I	G	R	G	T	R	T	S	I	D	H	L	K	E	I	A	R	G	A	I	R	V	I	G
D	G	Y	E	A	M	F	V	Q	D	V	L	A	T	R	R	M	V	E	V	P	I	P	-	G	S	K	L	E	G	V	S	V	L	D	A	D	I	H	D	V	T	G	V	I	I	I	G	V	G	R	G	-	E	L	I	I	D	P	P	-	D	Y	S	F	-	A	G	D	I	I	L	G	I	G	K	P	-	E	I	-	E	L	K	N	Y	I	S	A	-	-	-	-	-	-