PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1vf7a-  (  26 )      tlntelpgrTnAfr--iaeVrPqVngiIlkrlFkegsdVkagqqLYqI
d3lnnb-  (  39 )    tvaapfnLpAmIeadpaklvkvlPpLaGrIv-lnkqlgdeV-agdvLFtI
                         bbbbbb bb    bbb      bbb         bb      bbb

                             60        70        80        90        100 
d1vf7a-  (  72 )    dpatyeadyqsaqanlastqeqaqrykllvadqavs------kqqyadan
d3lnnb-  (  89 )    dSa-dlaqansdaakaraamtmarrnldrqeldseiaakrdfeqaqsdyd
                      a aaaaaaaaaaaaaaaaaaaaaaaaa             aaaaaaaa

                             110       120       130       140       150 
d1vf7a-  ( 116 )    aaylqSka-aveqarinlr---------yTkvlSpisgrIgrSavtegal
d3lnnb-  ( 140 )    qaaseSqadalaqlgakgGgtlqaggghiLAvrSpingrVvdlnaatgay
                    aaaaaa     aaaa               bb     bbb         b

                             160       170       180       190       200 
d1vf7a-  ( 156 )    VtngqanaMAtVqqLdpIyVdVtqpstallrLrreLasgqLeragdnAAk
d3lnnb-  ( 192 )    wnd-ttasLMtVAdLshVfVtAnaq-------ekdl--ghVyv----gQs
                    b         bbb   bbb  b                            

                             210       220       230       240       250 
d1vf7a-  ( 206 )    VsLkledgsqYpleGrLeFsevsvdegtgsvtIrAvFpNpnneLlpgmfV
d3lnnb-  ( 228 )    AtVkfdaydd-pqpgVryv-gqildadtrtTkVrMvfdnpdgrLrpgmfA
                      bb                               bbb          bb

                           
d1vf7a-  ( 256 )    hAqLqeg
d3lnnb-  ( 277 )    qAtFl-s
                    bbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1vf7a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vf7a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Multidrug resistance protein MexA domain	HlyD-like secretion proteins	Pseudomonas aeruginosa [TaxId: 287]		view
d3lnnb- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3lnnb- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Cupriavidus metallidurans [TaxId: 266264]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1vf7a_	A	P52477	GO:0005886
d1vf7a_	A	P52477	GO:0015562
d1vf7a_	A	P52477	GO:0016020
d1vf7a_	A	P52477	GO:0022857
d1vf7a_	A	P52477	GO:0042802
d1vf7a_	A	P52477	GO:0046677
d1vf7a_	A	P52477	GO:0051260
d1vf7a_	A	P52477	GO:0055085

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T	V	A	A	P	F	N	L	P	A	M	I	E	A	D	P	A	K	L	V	K	V	L	P	P	L	A	G	R	I	V	-	L	N	K	Q	L	G	D	E	V	-	A	G	D	V	L	F	T	I	D	S	A	-	D	L	A	Q	A	N	S	D	A	A	K	A	R	A	A	M	T	M	A	R	R	N	L	D	R	Q	E	L	D	S	E	I	A	A	K	R	D	F	E	Q	A	Q	S	D	Y	D	Q	A	A	S	E	S	Q	A	D	A	L	A	Q	L	G	A	K	G	G	G	T	L	Q	A	G	G	G	H	I	L	A	V	R	S	P	I	N	G	R	V	V	D	L	N	A	A	T	G	A	Y	W	N	D	-	T	T	A	S	L	M	T	V	A	D	L	S	H	V	F	V	T	A	N	A	Q	-	-	-	-	-	-	-	E	K	D	L	-	-	G	H	V	Y	V	-	-	-	-	G	Q	S	A	T	V	K	F	D	A	Y	D	D	-	P	Q	P	G	V	R	Y	V	-	G	Q	I	L	D	A	D	T	R	T	T	K	V	R	M	V	F	D	N	P	D	G	R	L	R	P	G	M	F	A	Q	A	T	F	L	-	S

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