Superfamily : 111283 [ Putative modulator of DNA gyrase, PmbA/TldD ]
Class : Alpha and beta proteins (a+b)
Fold : Putative modulator of DNA gyrase, PmbA/TldD
# of Members : 3
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1vl4a-  (   2 )           tfeeFkdrLfalAkngV-eVqIsfletrefslrlangd-dqyt
d1vpba-  (   1 )         mItdnklAqwAmdyAlngCqaAkVlLysssntsflrd--dlqa--
d5njcb-  (   8 )    iqVeaqriLeeaVstAlelAsgkSdgAeVaVskttgisVsTrygevenve
                                aaaaaaaa     bbbbbbbbbbbbbbbb         

                             60        70        80        90        100 
d1vl4a-  (  45 )    da-gfnVeIkVlkdgktGtf-tqvl---npekcFeeAlsnlqvk----ke
d1vpba-  (  51 )    ---sgGLsLsLyVdgrygsistnrlr--eLetfIkngIdsTrylakdear
d5njcb-  (  60 )    fnsdgaLgItVyhqnrkgsasstdlspqAIartVqaAldiA-ytspdpcA
                         bbbbbbbb  bbbbb         aaaaaaaaaa           

                             110       120       130       140       150 
d1vl4a-  (  93 )    yFfegg----keyreMeTyvgrFeklsvkekmdmAkkAhesAa-kderVv
d1vpba-  (  99 )    vlAdpsrYykggkpdlklyDakfaslnpddkiemAkaVaeeAlgkderii
d5njcb-  ( 110 )    gVAdkelLAf-dapdLdLfh--paevspdeAielAarAEqaAlqadkrIt
                                               aaaaaaaaaaaaa        bb

                             160       170       180       190       200 
d1vl4a-  ( 138 )    mVptVmYkdmvi-kiiTNtlgLdvesqmDGgfLfAmAiArda-nprsgsw
d1vpba-  ( 149 )    sV-GSsYgDGedfaYrlIsngFegetksTwYsLsAdItIrg-geapsaw-
d5njcb-  ( 157 )    nTegGsFnshygVkVfGNshgMlqGycsTrHsLsScViAeengdmerdyA
                    bb bbbbbbbbb bbbbb    bb   bbbbbbbbbbbb       bbb 

                             210       220       230       240       250 
d1vl4a-  ( 187 )    yeLArtPedLn--peIGkrAaeeAisligSktipsg-ypVLMrnTALLdL
d1vpba-  ( 199 )    yEsslymndLi-kkgIGqkAlerVl-klgqkkvs-gkytMVVdpmnSsrL
d5njcb-  ( 207 )    yTigramsdLqtpewVGadCArrTlsrLsprklstmkapVIFanevAtgL
                    bbbb  333      aaaaaaaaa               bbb    aaaa

                             260       270       280       290       300 
d1vl4a-  ( 236 )    MeMFipMISAenvqknlSpLkgklgeqvGnpaVsIkDlPyhpkGlsStpf
d1vpba-  ( 248 )    LspMisALnGsaLqqknSFLlnklnekiAsdrLtLtDePhlvkAsgAryf
d5njcb-  ( 257 )    FghLvgAIaGgsVyrksTfLldSlgkqiLPdwLtIeEhPhllkglaStPF
                        aa   aaaaa                    bbb             

                             310       320       330       340       350 
d1vl4a-  ( 286 )    DdeGVpTtekfVLenGvLktFLHnLtAe---g-vptGNGFvggIrPVNLm
d1vpba-  ( 298 )    DneGIaTerrsIFdkGvLntyFIdtynAkkmgvdptIs------gsSILv
d5njcb-  ( 307 )    DseGVrTerrdIIkdGiLtqwLLtsySArklglkStGHag----gihNWr
                             bbbbb  bb                              bb

                             360       370       380       390       400 
d1vl4a-  ( 336 )    LmpgeksfeeLLkeMdrGVVITeVegmha-gAnsisGeFsLfAkGywVen
d1vpba-  ( 342 )    MetgdknldgliagvekGILVtgFng---gnnnsstGdFsYgIeGflIen
d5njcb-  ( 353 )    IaGqglsf-qMlkeMgtGLVVteLmg----gvsaitGdYsrgAaGfwVeG
                              aaa    bbbbbbbb            bbbbbbbbbbb  

                             410       420       430       440       450 
d1vl4a-  ( 385 )    GeiahGVedItIsgnFldLLrkIvlVGndvkVsqhTIAPSVlVevLdVa 
d1vpba-  ( 389 )    -GltqpVseMnVtgnLitLWnsLvaTGndprlnsswrIPSLVFegVdFsg
d5njcb-  ( 401 )    -eiqypVseItIagnLkdmWrnIvtVGndietrsniqCGSVLLpeMkIag
                         bbbbbbbbbbaaaaaa   bb         bb   bbb   bbb 

                     
d1vl4a-              
d1vpba-  ( 439 )    l
d5njcb-  ( 450 )    q
                     

 

 

Domain IDNameFamilySourceDomainSTRING-DB
PmbA-related protein TM0727Putative modulator of DNA gyrase, PmbA/TldDThermotoga maritima [TaxId: 2336]view
Putative modulator of DNA gyrase BT3649Putative modulator of DNA gyrase, PmbA/TldDBacteroides thetaiotaomicron [TaxId: 818]view
automated matchesautomated matchesEscherichia coli [TaxId: 511145]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450
- - - - - - - T F E E F K D R L F A L A K N G V - E V Q I S F L E T R E F S L R L A N G D - D Q Y T D A - G F N V E I K V L K D G K T G T F - T Q V L - - - N P E K C F E E A L S N L Q V K - - - - K E Y F F E G G - - - - K E Y R E M E T Y V G R F E K L S V K E K M D M A K K A H E S A A - K D E R V V M V P T V M Y K D M V I - K I I T N T L G L D V E S Q M D G G F L F A M A I A R D A - N P R S G S W Y E L A R T P E D L N - - P E I G K R A A E E A I S L I G S K T I P S G - Y P V L M R N T A L L D L M E M F I P M I S A E N V Q K N L S P L K G K L G E Q V G N P A V S I K D L P Y H P K G L S S T P F D D E G V P T T E K F V L E N G V L K T F L H N L T A E - - - G - V P T G N G F V G G I R P V N L M L M P G E K S F E E L L K E M D R G V V I T E V E G M H A - G A N S I S G E F S L F A K G Y W V E N G E I A H G V E D I T I S G N F L D L L R K I V L V G N D V K V S Q H T I A P S V L V E V L D V A - -
- - - - - M I T D N K L A Q W A M D Y A L N G C Q A A K V L L Y S S S N T S F L R D - - D L Q A - - - - - S G G L S L S L Y V D G R Y G S I S T N R L R - - E L E T F I K N G I D S T R Y L A K D E A R V L A D P S R Y Y K G G K P D L K L Y D A K F A S L N P D D K I E M A K A V A E E A L G K D E R I I S V - G S S Y G D G E D F A Y R L I S N G F E G E T K S T W Y S L S A D I T I R G - G E A P S A W - Y E S S L Y M N D L I - K K G I G Q K A L E R V L - K L G Q K K V S - G K Y T M V V D P M N S S R L L S P M I S A L N G S A L Q Q K N S F L L N K L N E K I A S D R L T L T D E P H L V K A S G A R Y F D N E G I A T E R R S I F D K G V L N T Y F I D T Y N A K K M G V D P T I S - - - - - - G S S I L V M E T G D K N L D G L I A G V E K G I L V T G F N G - - - G N N N S S T G D F S Y G I E G F L I E N - G L T Q P V S E M N V T G N L I T L W N S L V A T G N D P R L N S S W R I P S L V F E G V D F S G L
I Q V E A Q R I L E E A V S T A L E L A S G K S D G A E V A V S K T T G I S V S T R Y G E V E N V E F N S D G A L G I T V Y H Q N R K G S A S S T D L S P Q A I A R T V Q A A L D I A - Y T S P D P C A G V A D K E L L A F - D A P D L D L F H - - P A E V S P D E A I E L A A R A E Q A A L Q A D K R I T N T E G G S F N S H Y G V K V F G N S H G M L Q G Y C S T R H S L S S C V I A E E N G D M E R D Y A Y T I G R A M S D L Q T P E W V G A D C A R R T L S R L S P R K L S T M K A P V I F A N E V A T G L F G H L V G A I A G G S V Y R K S T F L L D S L G K Q I L P D W L T I E E H P H L L K G L A S T P F D S E G V R T E R R D I I K D G I L T Q W L L T S Y S A R K L G L K S T G H A G - - - - G I H N W R I A G Q G L S F - Q M L K E M G T G L V V T E L M G - - - - G V S A I T G D Y S R G A A G F W V E G - E I Q Y P V S E I T I A G N L K D M W R N I V T V G N D I E T R S N I Q C G S V L L P E M K I A G Q

 

 

 

 

 

Member Chain UniProtKB GO term
d1vl4a_ A Q9WZI6 GO:0005829
d1vl4a_ A Q9WZI6 GO:0006508
d1vl4a_ A Q9WZI6 GO:0008237
d1vl4a_ A Q9WZI6 GO:0005829
d1vl4a_ A Q9WZI6 GO:0006508
d1vl4a_ A Q9WZI6 GO:0008237
d1vpba_ A Q8A1L2 GO:0005829
d1vpba_ A Q8A1L2 GO:0006508
d1vpba_ A Q8A1L2 GO:0008237
d1vpba_ A Q8A1L2 GO:0005829
d1vpba_ A Q8A1L2 GO:0006508
d1vpba_ A Q8A1L2 GO:0008237