PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1utaa-  ( 243 )        kderrwmvqCGSFrgaeqAetvraqlafegFdSkittnngwnrvvi
d1x60a-  (   1 )    lkktsssGlykvqigafkvkanAdslasnAeakgFdsivllkdglykvqi
                                       aaaaaaaaaaaaaa    bbbbb  bbbbb 

                             60        70        80  
d1utaa-  ( 289 )    gpvkgkenAdstlnrlkmAgHtnCiRlaagg
d1x60a-  (  51 )    GafsskdnAdtlaarAknAgfd-Aiviles 
                          aaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1utaa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1utaa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cell division protein FtsN	Sporulation related repeat	Escherichia coli [TaxId: 562]		view
d1x60a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1x60a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Bacillus subtilis [TaxId: 1423]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80
-	-	-	-	K	D	E	R	R	W	M	V	Q	C	G	S	F	R	G	A	E	Q	A	E	T	V	R	A	Q	L	A	F	E	G	F	D	S	K	I	T	T	N	N	G	W	N	R	V	V	I	G	P	V	K	G	K	E	N	A	D	S	T	L	N	R	L	K	M	A	G	H	T	N	C	I	R	L	A	A	G	G
L	K	K	T	S	S	S	G	L	Y	K	V	Q	I	G	A	F	K	V	K	A	N	A	D	S	L	A	S	N	A	E	A	K	G	F	D	S	I	V	L	L	K	D	G	L	Y	K	V	Q	I	G	A	F	S	S	K	D	N	A	D	T	L	A	A	R	A	K	N	A	G	F	D	-	A	I	V	I	L	E	S	-

Member	Chain	UniProtKB	GO term
d1utaa_	A	P29131	GO:0042834

									10										20										30										40										50										60										70										80
-	-	-	-	K	D	E	R	R	W	M	V	Q	C	G	S	F	R	G	A	E	Q	A	E	T	V	R	A	Q	L	A	F	E	G	F	D	S	K	I	T	T	N	N	G	W	N	R	V	V	I	G	P	V	K	G	K	E	N	A	D	S	T	L	N	R	L	K	M	A	G	H	T	N	C	I	R	L	A	A	G	G
L	K	K	T	S	S	S	G	L	Y	K	V	Q	I	G	A	F	K	V	K	A	N	A	D	S	L	A	S	N	A	E	A	K	G	F	D	S	I	V	L	L	K	D	G	L	Y	K	V	Q	I	G	A	F	S	S	K	D	N	A	D	T	L	A	A	R	A	K	N	A	G	F	D	-	A	I	V	I	L	E	S	-

									10										20										30										40										50										60										70										80
-	-	-	-	K	D	E	R	R	W	M	V	Q	C	G	S	F	R	G	A	E	Q	A	E	T	V	R	A	Q	L	A	F	E	G	F	D	S	K	I	T	T	N	N	G	W	N	R	V	V	I	G	P	V	K	G	K	E	N	A	D	S	T	L	N	R	L	K	M	A	G	H	T	N	C	I	R	L	A	A	G	G
L	K	K	T	S	S	S	G	L	Y	K	V	Q	I	G	A	F	K	V	K	A	N	A	D	S	L	A	S	N	A	E	A	K	G	F	D	S	I	V	L	L	K	D	G	L	Y	K	V	Q	I	G	A	F	S	S	K	D	N	A	D	T	L	A	A	R	A	K	N	A	G	F	D	-	A	I	V	I	L	E	S	-

									10										20										30										40										50										60										70										80
-	-	-	-	K	D	E	R	R	W	M	V	Q	C	G	S	F	R	G	A	E	Q	A	E	T	V	R	A	Q	L	A	F	E	G	F	D	S	K	I	T	T	N	N	G	W	N	R	V	V	I	G	P	V	K	G	K	E	N	A	D	S	T	L	N	R	L	K	M	A	G	H	T	N	C	I	R	L	A	A	G	G
L	K	K	T	S	S	S	G	L	Y	K	V	Q	I	G	A	F	K	V	K	A	N	A	D	S	L	A	S	N	A	E	A	K	G	F	D	S	I	V	L	L	K	D	G	L	Y	K	V	Q	I	G	A	F	S	S	K	D	N	A	D	T	L	A	A	R	A	K	N	A	G	F	D	-	A	I	V	I	L	E	S	-