PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1q8ka2  ( 186 )    qavkirADievaCygyeGidAvkeAlraGlncst---enm-pikinliap
d2qn6b-  ( 176 )     kvkmsglItVrTneplgvekikeViskAlenIeqdyesLlnikIytiga
                      bbbbbbb bbb      aaaaaaaaaaa            bbbbb   

                             60        70        80        90        100 
d1q8ka2  ( 232 )    prYvMttttlerteGlsvlsqAMavikekieekrGvFnvqmepkvvtdtd
d2qn6b-  ( 225 )    pryrVdVvGtnpkeAseAlnqIisnLikiGkeenVdIsvv          
                     bbbbbbbb  aaaaaaaaaaaaaaaaaaaa   bbb             

                             110       120 
d1q8ka2  ( 282 )    etelarqmerlerenaevdgd
d2qn6b-

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1q8ka2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1q8ka2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	eIF-2-alpha, C-terminal domain	eIF-2-alpha, C-terminal domain	Human (Homo sapiens) [TaxId: 9606]		view
d2qn6b- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2qn6b- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	eIF-2-alpha, C-terminal domain	eIF-2-alpha, C-terminal domain	Sulfolobus solfataricus [TaxId: 2287]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1q8ka2	A	P05198	GO:0000423
d1q8ka2	A	P05198	GO:0003676
d1q8ka2	A	P05198	GO:0003723
d1q8ka2	A	P05198	GO:0003743
d1q8ka2	A	P05198	GO:0005515
d1q8ka2	A	P05198	GO:0005634
d1q8ka2	A	P05198	GO:0005737
d1q8ka2	A	P05198	GO:0005739
d1q8ka2	A	P05198	GO:0005829
d1q8ka2	A	P05198	GO:0005850
d1q8ka2	A	P05198	GO:0006412
d1q8ka2	A	P05198	GO:0006413
d1q8ka2	A	P05198	GO:0006417
d1q8ka2	A	P05198	GO:0010494
d1q8ka2	A	P05198	GO:0016020
d1q8ka2	A	P05198	GO:0032057
d1q8ka2	A	P05198	GO:0033290
d1q8ka2	A	P05198	GO:0034063
d1q8ka2	A	P05198	GO:0034198
d1q8ka2	A	P05198	GO:0034599
d1q8ka2	A	P05198	GO:0034605
d1q8ka2	A	P05198	GO:0034644
d1q8ka2	A	P05198	GO:0034976
d1q8ka2	A	P05198	GO:0036490
d1q8ka2	A	P05198	GO:0036499
d1q8ka2	A	P05198	GO:0043022
d1q8ka2	A	P05198	GO:0043558
d1q8ka2	A	P05198	GO:0044207
d1q8ka2	A	P05198	GO:0045202
d1q8ka2	A	P05198	GO:0070062
d1q8ka2	A	P05198	GO:0097451
d1q8ka2	A	P05198	GO:0140468
d1q8ka2	A	P05198	GO:1904373
d1q8ka2	A	P05198	GO:1990737
d1q8ka2	A	P05198	GO:2000676

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