PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1v30a1  (   7 )    svrIAVYGtlRkgkplhwyLk-----gakflgedwI-egyqLyfe---yl
d1vkba1  (   1 )    mahIFVYgtLkrgqpnhkvMldhshglAafrGrGÇTvesFPLVIAgehni
d1xhsa-  (   1 )     mriFvYGslrhkqgnShwm-----tnaqllgdfsi-dnyqlyslg--hy
                      bbbb                      bbbbb        bbb      

                             60        70        80        90        100 
d1v30a1  (  48 )    PYAvk---gkgkLkVEVYeVdketferIneieigt-gyrlvevsTk----
d1vkba1  (  51 )    PwLLylpgkghçVtgeIYeVdeqMlrfLddfedcpsmYqrtalqVqvlew
d1xhsa-  (  42 )    pgAvp---gngtvhGevYridnatlaeldalrtrggeyarqliqtp----
                    bbbb          bbbbb  aaaaaaa          bbbbb       

                             110       120       130       140   
d1v30a1  (  90 )    ----fgkAfLwewgs----kprgkrIksgdfdeir          
d1vkba1  ( 101 )    epgdsvqCfVYTTatyapewlflpyhe--sYdSegphglrynprn
d1xhsa-  (  85 )    ----ygsAwMyvyqrpvd---glkliesGdwld---------rdk
                           bbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1v30a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1v30a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein PH0828	Gamma-glutamyl cyclotransferase-like	Pyrococcus horikoshii [TaxId: 53953]	view
d1vkba1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vkba1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein LOC223267	Gamma-glutamyl cyclotransferase-like	Mouse (Mus musculus) [TaxId: 10090]	view
d1xhsa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1xhsa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein YtfP	Gamma-glutamyl cyclotransferase-like	Escherichia coli [TaxId: 562]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	A	H	I	F	V	Y	G	T	L	K	R	G	Q	P	N	H	K	V	M	L	D	H	S	H	G	L	A	A	F	R	G	R	G	C	T	V	E	S	F	P	L	V	I	A	G	E	H	N	I	P	W	L	L	Y	L	P	G	K	G	H	C	V	T	G	E	I	Y	E	V	D	E	Q	M	L	R	F	L	D	D	F	E	D	C	P	S	M	Y	Q	R	T	A	L	Q	V	Q	V	L	E	W	E	P	G	D	S	V	Q	C	F	V	Y	T	T	A	T	Y	A	P	E	W	L	F	L	P	Y	H	E	-	-	S	Y	D	S	E	G	P	H	G	L	R	Y	N	P	R	N
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Member	Chain	UniProtKB	GO term
d1xhsa_	A	P0AE48	GO:0005829
d1xhsa_	A	P0AE48	GO:0061929

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M	A	H	I	F	V	Y	G	T	L	K	R	G	Q	P	N	H	K	V	M	L	D	H	S	H	G	L	A	A	F	R	G	R	G	C	T	V	E	S	F	P	L	V	I	A	G	E	H	N	I	P	W	L	L	Y	L	P	G	K	G	H	C	V	T	G	E	I	Y	E	V	D	E	Q	M	L	R	F	L	D	D	F	E	D	C	P	S	M	Y	Q	R	T	A	L	Q	V	Q	V	L	E	W	E	P	G	D	S	V	Q	C	F	V	Y	T	T	A	T	Y	A	P	E	W	L	F	L	P	Y	H	E	-	-	S	Y	D	S	E	G	P	H	G	L	R	Y	N	P	R	N
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S	V	R	I	A	V	Y	G	T	L	R	K	G	K	P	L	H	W	Y	L	K	-	-	-	-	-	G	A	K	F	L	G	E	D	W	I	-	E	G	Y	Q	L	Y	F	E	-	-	-	Y	L	P	Y	A	V	K	-	-	-	G	K	G	K	L	K	V	E	V	Y	E	V	D	K	E	T	F	E	R	I	N	E	I	E	I	G	T	-	G	Y	R	L	V	E	V	S	T	K	-	-	-	-	-	-	-	-	F	G	K	A	F	L	W	E	W	G	S	-	-	-	-	K	P	R	G	K	R	I	K	S	G	D	F	D	E	I	R	-	-	-	-	-	-	-	-	-	-
M	A	H	I	F	V	Y	G	T	L	K	R	G	Q	P	N	H	K	V	M	L	D	H	S	H	G	L	A	A	F	R	G	R	G	C	T	V	E	S	F	P	L	V	I	A	G	E	H	N	I	P	W	L	L	Y	L	P	G	K	G	H	C	V	T	G	E	I	Y	E	V	D	E	Q	M	L	R	F	L	D	D	F	E	D	C	P	S	M	Y	Q	R	T	A	L	Q	V	Q	V	L	E	W	E	P	G	D	S	V	Q	C	F	V	Y	T	T	A	T	Y	A	P	E	W	L	F	L	P	Y	H	E	-	-	S	Y	D	S	E	G	P	H	G	L	R	Y	N	P	R	N
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M	A	H	I	F	V	Y	G	T	L	K	R	G	Q	P	N	H	K	V	M	L	D	H	S	H	G	L	A	A	F	R	G	R	G	C	T	V	E	S	F	P	L	V	I	A	G	E	H	N	I	P	W	L	L	Y	L	P	G	K	G	H	C	V	T	G	E	I	Y	E	V	D	E	Q	M	L	R	F	L	D	D	F	E	D	C	P	S	M	Y	Q	R	T	A	L	Q	V	Q	V	L	E	W	E	P	G	D	S	V	Q	C	F	V	Y	T	T	A	T	Y	A	P	E	W	L	F	L	P	Y	H	E	-	-	S	Y	D	S	E	G	P	H	G	L	R	Y	N	P	R	N
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