PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1t6t1-  (   5 )    prnlseWikeLkkaSreAVILVegknDkkaLskfs--IknVidlsg-kry
d2fcja1  (   1 )    mr------------rvekVIIVegrsdkqkVaaVLnepVvIvCTngtisd
                                      bbbb  aaaaaaaa        bbb      a

                             60        70        80        90        100 
d1t6t1-  (  52 )    adVvdLegkwe--kVILLFdldthGeriNqkk-elLssqgflVdenfRnf
d2fcja1  (  39 )    arLeeladelegydVYLLAdadeaGekLRrqFrrmFp--eAehlyIdr--
                    aaaa         bbbb     aaaaaaaa   aa      bbb      

                             110       120       130 
d1t6t1-  ( 101 )    LkkwniihIeeI                     
d2fcja1  (  85 )    ----ayreVaaApiwhLAqVLlrarFdVriesl

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1t6t1- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1t6t1- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein aq_2086	Toprim domain	Aquifex aeolicus [TaxId: 63363]		view
d2fcja1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2fcja1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein RBSTP2199	Toprim domain	Bacillus stearothermophilus [TaxId: 1422]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	R	-	-	-	-	-	-	-	-	-	-	-	-	R	V	E	K	V	I	I	V	E	G	R	S	D	K	Q	K	V	A	A	V	L	N	E	P	V	V	I	V	C	T	N	G	T	I	S	D	A	R	L	E	E	L	A	D	E	L	E	G	Y	D	V	Y	L	L	A	D	A	D	E	A	G	E	K	L	R	R	Q	F	R	R	M	F	P	-	-	E	A	E	H	L	Y	I	D	R	-	-	-	-	-	-	A	Y	R	E	V	A	A	A	P	I	W	H	L	A	Q	V	L	L	R	A	R	F	D	V	R	I	E	S	L

Member	Chain	UniProtKB	GO term
d2fcja1	A	Q5KVJ9	GO:0006364
d2fcja1	A	Q5KVJ9	GO:0043822
d2fcja1	A	Q5KVJ9	GO:0046872

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M	R	-	-	-	-	-	-	-	-	-	-	-	-	R	V	E	K	V	I	I	V	E	G	R	S	D	K	Q	K	V	A	A	V	L	N	E	P	V	V	I	V	C	T	N	G	T	I	S	D	A	R	L	E	E	L	A	D	E	L	E	G	Y	D	V	Y	L	L	A	D	A	D	E	A	G	E	K	L	R	R	Q	F	R	R	M	F	P	-	-	E	A	E	H	L	Y	I	D	R	-	-	-	-	-	-	A	Y	R	E	V	A	A	A	P	I	W	H	L	A	Q	V	L	L	R	A	R	F	D	V	R	I	E	S	L

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M	R	-	-	-	-	-	-	-	-	-	-	-	-	R	V	E	K	V	I	I	V	E	G	R	S	D	K	Q	K	V	A	A	V	L	N	E	P	V	V	I	V	C	T	N	G	T	I	S	D	A	R	L	E	E	L	A	D	E	L	E	G	Y	D	V	Y	L	L	A	D	A	D	E	A	G	E	K	L	R	R	Q	F	R	R	M	F	P	-	-	E	A	E	H	L	Y	I	D	R	-	-	-	-	-	-	A	Y	R	E	V	A	A	A	P	I	W	H	L	A	Q	V	L	L	R	A	R	F	D	V	R	I	E	S	L

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M	R	-	-	-	-	-	-	-	-	-	-	-	-	R	V	E	K	V	I	I	V	E	G	R	S	D	K	Q	K	V	A	A	V	L	N	E	P	V	V	I	V	C	T	N	G	T	I	S	D	A	R	L	E	E	L	A	D	E	L	E	G	Y	D	V	Y	L	L	A	D	A	D	E	A	G	E	K	L	R	R	Q	F	R	R	M	F	P	-	-	E	A	E	H	L	Y	I	D	R	-	-	-	-	-	-	A	Y	R	E	V	A	A	A	P	I	W	H	L	A	Q	V	L	L	R	A	R	F	D	V	R	I	E	S	L