PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1sska1  (   5 )    hhhhhhssglvprgsamglp----nntaswftAltqhgk--eelrFprgq
d2geca1  (  23 )                     rppkvgssgnaSwFQAIkAkklnspqPkFe-gs
                                                     bbb              

                             60        70        80        90        100 
d1sska1  (  49 )    gvPintnSGpdDqiGyYrratrrvrggdgkmkelsprWyFyylGtgpeas
d2geca1  (  55 )    GVPdnenLktsqqHGYWrrqarfkpg-kgrrkpvpdAWyFyYTgtGpaad
                                 bbbbbbb                bbbbbb        

                             110       120       130       140       150 
d1sska1  (  99 )    lpygankegivwvategAlntpkdhigtrnpnnnaAtvlqlpqgttlpkg
d2geca1  ( 104 )    lnwgdsqdgIvwVaakgAdvksrSnqgtrdpdkfdqypLrF-sdggPdgn
                             bbbb                                     

                             160 
d1sska1  ( 149 )    Fyaegsrggs
d2geca1  ( 153 )    Frwdfipl  
                    bb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1sska1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1sska1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Nucleocapsid protein	Coronavirus RNA-binding domain	SARS coronavirus, (SARS-CoV) [TaxId: 227859]		view
d2geca1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2geca1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Nucleocapsid protein	Coronavirus RNA-binding domain	Avian infectious bronchitis virus [TaxId: 11120]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d2geca1	A	P32923	GO:0003723
d2geca1	A	P32923	GO:0019013

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