PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1m5ya1  (  25 )                                                      
d1w26a1  ( 248 )    ltaefIkrfgvedgsveglraevrknerelksAirnrvksqaieglvkan
                                                                      

                             60        70        80        90        100 
d1m5ya1  (  25 )      vdkvAAvVnngvVlesdVdglmqsvklnaaqarq---------qlpdd
d1w26a1  ( 299 )    di-----------dVpaalidseIdvLrrqaAq---rfggnekqAlelpr
                                    aaaaaaaaaaaaaaaa                  

                             110       120       130       140       150 
d1m5ya1  (  64 )    atLrhqIMerlImdqIIlqmGqkmgvkIsdeqLdqaIaniAkqnnmtldq
d1w26a1  ( 335 )    elfeeqAkrrvvvgllLgevirtnelkadeervkgliee-Asaye-dpke
                       aaaaaaaaaaaaaaaaaaaa      aaaaaaaaa         aaa

                             160       170       180       190       200 
d1m5ya1  ( 114 )    mrsrlaydglnyntyrnqirkemiiseVrnneVrrrIt---ilpqevesl
d1w26a1  ( 384 )    viefyskn----keldn--rnvAleeqAVeavlakakvtek---------
                    aaaaaaa             aaaaaaaaaaaaa                 

                             210       220       230     
d1m5ya1  ( 161 )    aqqvdrayrmlmnrkfseeaasWmqeqrasayvkils
d1w26a1  ( 421 )    --------------------ettfnelnqqa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1m5ya1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1m5ya1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Porin chaperone SurA, peptide-binding domain	Porin chaperone SurA, peptide-binding domain	Escherichia coli [TaxId: 562]		view
d1w26a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1w26a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Trigger factor, C-terminal domain	TF C-terminus	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1m5ya1	A	P0ABZ6	GO:0003755
d1m5ya1	A	P0ABZ6	GO:0003755
d1m5ya1	A	P0ABZ6	GO:0005515
d1m5ya1	A	P0ABZ6	GO:0005515
d1m5ya1	A	P0ABZ6	GO:0006457
d1m5ya1	A	P0ABZ6	GO:0006457
d1m5ya1	A	P0ABZ6	GO:0030288
d1m5ya1	A	P0ABZ6	GO:0030288
d1m5ya1	A	P0ABZ6	GO:0036506
d1m5ya1	A	P0ABZ6	GO:0036506
d1m5ya1	A	P0ABZ6	GO:0042277
d1m5ya1	A	P0ABZ6	GO:0042277
d1m5ya1	A	P0ABZ6	GO:0042597
d1m5ya1	A	P0ABZ6	GO:0042597
d1m5ya1	A	P0ABZ6	GO:0043165
d1m5ya1	A	P0ABZ6	GO:0043165
d1m5ya1	A	P0ABZ6	GO:0050821
d1m5ya1	A	P0ABZ6	GO:0050821
d1m5ya1	A	P0ABZ6	GO:0051082
d1m5ya1	A	P0ABZ6	GO:0051082
d1m5ya1	A	P0ABZ6	GO:0060274
d1m5ya1	A	P0ABZ6	GO:0060274
d1m5ya1	A	P0ABZ6	GO:0061077
d1m5ya1	A	P0ABZ6	GO:0061077
d1w26a1	A	P0A850	GO:0003755
d1w26a1	A	P0A850	GO:0005515
d1w26a1	A	P0A850	GO:0005737
d1w26a1	A	P0A850	GO:0005829
d1w26a1	A	P0A850	GO:0006457
d1w26a1	A	P0A850	GO:0009408
d1w26a1	A	P0A850	GO:0015031
d1w26a1	A	P0A850	GO:0016020
d1w26a1	A	P0A850	GO:0042802
d1w26a1	A	P0A850	GO:0043022
d1w26a1	A	P0A850	GO:0043335
d1w26a1	A	P0A850	GO:0044183
d1w26a1	A	P0A850	GO:0051083
d1w26a1	A	P0A850	GO:0051301
d1w26a1	A	P0A850	GO:0061077
d1w26a1	A	P0A850	GO:1990169
d1w26a1	A	P0A850	GO:0003755
d1w26a1	A	P0A850	GO:0005515
d1w26a1	A	P0A850	GO:0005737
d1w26a1	A	P0A850	GO:0005829
d1w26a1	A	P0A850	GO:0006457
d1w26a1	A	P0A850	GO:0009408
d1w26a1	A	P0A850	GO:0015031
d1w26a1	A	P0A850	GO:0016020
d1w26a1	A	P0A850	GO:0042802
d1w26a1	A	P0A850	GO:0043022
d1w26a1	A	P0A850	GO:0043335
d1w26a1	A	P0A850	GO:0044183
d1w26a1	A	P0A850	GO:0051083
d1w26a1	A	P0A850	GO:0051301
d1w26a1	A	P0A850	GO:0061077
d1w26a1	A	P0A850	GO:1990169
d1w26a1	A	P0A850	GO:0003755
d1w26a1	A	P0A850	GO:0005515
d1w26a1	A	P0A850	GO:0005737
d1w26a1	A	P0A850	GO:0005829
d1w26a1	A	P0A850	GO:0006457
d1w26a1	A	P0A850	GO:0009408
d1w26a1	A	P0A850	GO:0015031
d1w26a1	A	P0A850	GO:0016020
d1w26a1	A	P0A850	GO:0042802
d1w26a1	A	P0A850	GO:0043022
d1w26a1	A	P0A850	GO:0043335
d1w26a1	A	P0A850	GO:0044183
d1w26a1	A	P0A850	GO:0051083
d1w26a1	A	P0A850	GO:0051301
d1w26a1	A	P0A850	GO:0061077
d1w26a1	A	P0A850	GO:1990169

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