PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1puza-  (   1 )    mmvfddiakrkirfqtrrglleldliFgrFmekefehlsdkelseFseil
d1x6ia1  (   1 )       mdinnkarIhwaCrrgmreLdisImpFFeheYdsLsddekriFirLL
                            aaaaaa      aaaaaaaaaaaaa 333  aaaaaaaaaaa

                             60        70        80        90  
d1puza-  (  51 )    efqDqellalinghsetdkghlipmlekirra         
d1x6ia1  (  48 )    ecddpdLfnwlmnhgkPadaelemMVrlIqtrnrergpvai
                       aaaaaaaa          aaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1puza- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1puza- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein NMA1147	YgfY-like	Neisseria meningitidis, mc58 [TaxId: 487]		view
d1x6ia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1x6ia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90
M	M	V	F	D	D	I	A	K	R	K	I	R	F	Q	T	R	R	G	L	L	E	L	D	L	I	F	G	R	F	M	E	K	E	F	E	H	L	S	D	K	E	L	S	E	F	S	E	I	L	E	F	Q	D	Q	E	L	L	A	L	I	N	G	H	S	E	T	D	K	G	H	L	I	P	M	L	E	K	I	R	R	A	-	-	-	-	-	-	-	-	-
-	-	-	M	D	I	N	N	K	A	R	I	H	W	A	C	R	R	G	M	R	E	L	D	I	S	I	M	P	F	F	E	H	E	Y	D	S	L	S	D	D	E	K	R	I	F	I	R	L	L	E	C	D	D	P	D	L	F	N	W	L	M	N	H	G	K	P	A	D	A	E	L	E	M	M	V	R	L	I	Q	T	R	N	R	E	R	G	P	V	A	I

Member	Chain	UniProtKB	GO term
d1puza_	A	Q7DDK1	GO:0005737

									10										20										30										40										50										60										70										80										90
M	M	V	F	D	D	I	A	K	R	K	I	R	F	Q	T	R	R	G	L	L	E	L	D	L	I	F	G	R	F	M	E	K	E	F	E	H	L	S	D	K	E	L	S	E	F	S	E	I	L	E	F	Q	D	Q	E	L	L	A	L	I	N	G	H	S	E	T	D	K	G	H	L	I	P	M	L	E	K	I	R	R	A	-	-	-	-	-	-	-	-	-
-	-	-	M	D	I	N	N	K	A	R	I	H	W	A	C	R	R	G	M	R	E	L	D	I	S	I	M	P	F	F	E	H	E	Y	D	S	L	S	D	D	E	K	R	I	F	I	R	L	L	E	C	D	D	P	D	L	F	N	W	L	M	N	H	G	K	P	A	D	A	E	L	E	M	M	V	R	L	I	Q	T	R	N	R	E	R	G	P	V	A	I

									10										20										30										40										50										60										70										80										90
M	M	V	F	D	D	I	A	K	R	K	I	R	F	Q	T	R	R	G	L	L	E	L	D	L	I	F	G	R	F	M	E	K	E	F	E	H	L	S	D	K	E	L	S	E	F	S	E	I	L	E	F	Q	D	Q	E	L	L	A	L	I	N	G	H	S	E	T	D	K	G	H	L	I	P	M	L	E	K	I	R	R	A	-	-	-	-	-	-	-	-	-
-	-	-	M	D	I	N	N	K	A	R	I	H	W	A	C	R	R	G	M	R	E	L	D	I	S	I	M	P	F	F	E	H	E	Y	D	S	L	S	D	D	E	K	R	I	F	I	R	L	L	E	C	D	D	P	D	L	F	N	W	L	M	N	H	G	K	P	A	D	A	E	L	E	M	M	V	R	L	I	Q	T	R	N	R	E	R	G	P	V	A	I

									10										20										30										40										50										60										70										80										90
M	M	V	F	D	D	I	A	K	R	K	I	R	F	Q	T	R	R	G	L	L	E	L	D	L	I	F	G	R	F	M	E	K	E	F	E	H	L	S	D	K	E	L	S	E	F	S	E	I	L	E	F	Q	D	Q	E	L	L	A	L	I	N	G	H	S	E	T	D	K	G	H	L	I	P	M	L	E	K	I	R	R	A	-	-	-	-	-	-	-	-	-
-	-	-	M	D	I	N	N	K	A	R	I	H	W	A	C	R	R	G	M	R	E	L	D	I	S	I	M	P	F	F	E	H	E	Y	D	S	L	S	D	D	E	K	R	I	F	I	R	L	L	E	C	D	D	P	D	L	F	N	W	L	M	N	H	G	K	P	A	D	A	E	L	E	M	M	V	R	L	I	Q	T	R	N	R	E	R	G	P	V	A	I