PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

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d1ozbi-  (   2 )     igrnepCpcg----------gkkykhchgr------a
d2i9wa2  (   2 )    l-fsiqtCpcqinpalnavstpllyqdccqpyhdglyn
d2i9wa3  ( 160 )    svtqkqpCicgsg---------ekfkrccGyi      
                                            333

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1ozbi- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ozbi- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Preprotein translocase SecA C-terminal domain	Sec-C motif	Haemophilus influenzae [TaxId: 727]	view
d2i9wa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2i9wa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein Psyc2064	Sec-C motif	Psychrobacter arcticus [TaxId: 334543]	view
d2i9wa3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2i9wa3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein Psyc2064	Sec-C motif	Psychrobacter arcticus [TaxId: 334543]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	I	G	R	N	E	P	C	P	C	G	-	-	-	-	-	-	-	-	-	-	G	K	K	Y	K	H	C	H	G	R	-	-	-	-	-	-	A
L	-	F	S	I	Q	T	C	P	C	Q	I	N	P	A	L	N	A	V	S	T	P	L	L	Y	Q	D	C	C	Q	P	Y	H	D	G	L	Y	N
S	V	T	Q	K	Q	P	C	I	C	G	S	G	-	-	-	-	-	-	-	-	-	E	K	F	K	R	C	C	G	Y	I	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d2i9wa2	A	Q4FPZ7	GO:0046872
d2i9wa2	A	Q4FPZ7	GO:0046872
d2i9wa2	A	Q4FPZ7	GO:0046872
d2i9wa3	A	Q4FPZ7	GO:0046872
d2i9wa3	A	Q4FPZ7	GO:0046872
d2i9wa3	A	Q4FPZ7	GO:0046872

									10										20										30
-	I	G	R	N	E	P	C	P	C	G	-	-	-	-	-	-	-	-	-	-	G	K	K	Y	K	H	C	H	G	R	-	-	-	-	-	-	A
L	-	F	S	I	Q	T	C	P	C	Q	I	N	P	A	L	N	A	V	S	T	P	L	L	Y	Q	D	C	C	Q	P	Y	H	D	G	L	Y	N
S	V	T	Q	K	Q	P	C	I	C	G	S	G	-	-	-	-	-	-	-	-	-	E	K	F	K	R	C	C	G	Y	I	-	-	-	-	-	-

									10										20										30
-	I	G	R	N	E	P	C	P	C	G	-	-	-	-	-	-	-	-	-	-	G	K	K	Y	K	H	C	H	G	R	-	-	-	-	-	-	A
L	-	F	S	I	Q	T	C	P	C	Q	I	N	P	A	L	N	A	V	S	T	P	L	L	Y	Q	D	C	C	Q	P	Y	H	D	G	L	Y	N
S	V	T	Q	K	Q	P	C	I	C	G	S	G	-	-	-	-	-	-	-	-	-	E	K	F	K	R	C	C	G	Y	I	-	-	-	-	-	-

									10										20										30
-	I	G	R	N	E	P	C	P	C	G	-	-	-	-	-	-	-	-	-	-	G	K	K	Y	K	H	C	H	G	R	-	-	-	-	-	-	A
L	-	F	S	I	Q	T	C	P	C	Q	I	N	P	A	L	N	A	V	S	T	P	L	L	Y	Q	D	C	C	Q	P	Y	H	D	G	L	Y	N
S	V	T	Q	K	Q	P	C	I	C	G	S	G	-	-	-	-	-	-	-	-	-	E	K	F	K	R	C	C	G	Y	I	-	-	-	-	-	-