PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1olza3  ( 481 )       fÇgk-hg-tÇedÇVlardpyÇAwSppta------tÇvalh---qtes
d1txvb4  (   1 )    gpniÇttrgvsscqqÇlaV-spmÇAwÇsdeaLplgsprçdlkenLlkdnÇ
                                aaaaa      bbbb           bbb         

                             60        70  
d1olza3  ( 517 )    psrgliqemsgdasvÇpdks
d1txvb4  (  50 )    apesIefp            
                     333

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1olza3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1olza3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Semaphorin 4d	Plexin repeat	Human (Homo sapiens) [TaxId: 9606]		view
d1txvb4 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1txvb4 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Integrin beta-3	Plexin repeat	Human (Homo sapiens) [TaxId: 9606]		view

Domain ID	Name
d6wvzm2	6wvz M:516-564

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
-	-	-	F	C	G	K	-	H	G	-	T	C	E	D	C	V	L	A	R	D	P	Y	C	A	W	S	P	P	T	A	-	-	-	-	-	-	T	C	V	A	L	H	-	-	-	Q	T	E	S	P	S	R	G	L	I	Q	E	M	S	G	D	A	S	V	C	P	D	K	S
G	P	N	I	C	T	T	R	G	V	S	S	C	Q	Q	C	L	A	V	-	S	P	M	C	A	W	C	S	D	E	A	L	P	L	G	S	P	R	C	D	L	K	E	N	L	L	K	D	N	C	A	P	E	S	I	E	F	P	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1olza3	A	Q92854	GO:0030215
d1olza3	A	Q92854	GO:0030215

									10										20										30										40										50										60										70
-	-	-	F	C	G	K	-	H	G	-	T	C	E	D	C	V	L	A	R	D	P	Y	C	A	W	S	P	P	T	A	-	-	-	-	-	-	T	C	V	A	L	H	-	-	-	Q	T	E	S	P	S	R	G	L	I	Q	E	M	S	G	D	A	S	V	C	P	D	K	S
G	P	N	I	C	T	T	R	G	V	S	S	C	Q	Q	C	L	A	V	-	S	P	M	C	A	W	C	S	D	E	A	L	P	L	G	S	P	R	C	D	L	K	E	N	L	L	K	D	N	C	A	P	E	S	I	E	F	P	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70
-	-	-	F	C	G	K	-	H	G	-	T	C	E	D	C	V	L	A	R	D	P	Y	C	A	W	S	P	P	T	A	-	-	-	-	-	-	T	C	V	A	L	H	-	-	-	Q	T	E	S	P	S	R	G	L	I	Q	E	M	S	G	D	A	S	V	C	P	D	K	S
G	P	N	I	C	T	T	R	G	V	S	S	C	Q	Q	C	L	A	V	-	S	P	M	C	A	W	C	S	D	E	A	L	P	L	G	S	P	R	C	D	L	K	E	N	L	L	K	D	N	C	A	P	E	S	I	E	F	P	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70
-	-	-	F	C	G	K	-	H	G	-	T	C	E	D	C	V	L	A	R	D	P	Y	C	A	W	S	P	P	T	A	-	-	-	-	-	-	T	C	V	A	L	H	-	-	-	Q	T	E	S	P	S	R	G	L	I	Q	E	M	S	G	D	A	S	V	C	P	D	K	S
G	P	N	I	C	T	T	R	G	V	S	S	C	Q	Q	C	L	A	V	-	S	P	M	C	A	W	C	S	D	E	A	L	P	L	G	S	P	R	C	D	L	K	E	N	L	L	K	D	N	C	A	P	E	S	I	E	F	P	-	-	-	-	-	-	-	-	-	-	-	-