PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

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d1q90m-  (  62 )    eaefiagtaltmvgmtlvglaigfvllrveslve
d4ogqf-  (   1 )     msgellnaallsfglifvgwalgalllkiqga 
                       aaaaaaaaaaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1q90m- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1q90m- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	PetM subunit of the cytochrome b6f complex	PetM subunit of the cytochrome b6f complex	Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]		view
d4ogqf- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4ogqf- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	PetM subunit of the cytochrome b6f complex	Nostoc sp. [TaxId: 103690]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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E	A	E	F	I	A	G	T	A	L	T	M	V	G	M	T	L	V	G	L	A	I	G	F	V	L	L	R	V	E	S	L	V	E
-	M	S	G	E	L	L	N	A	A	L	L	S	F	G	L	I	F	V	G	W	A	L	G	A	L	L	L	K	I	Q	G	A	-

Member	Chain	UniProtKB	GO term
d1q90m_	M	P23577	GO:0009512
d1q90m_	M	Q00471	GO:0009512
d1q90m_	M	P49728	GO:0009512
d1q90m_	M	P23230	GO:0009512
d1q90m_	M	Q08362	GO:0009512
d1q90m_	M	P50369	GO:0009512
d1q90m_	M	Q42496	GO:0009512
d1q90m_	M	P0C1D4	GO:0009512
d1q90m_	M	P23577	GO:0009512
d1q90m_	M	Q00471	GO:0009512
d1q90m_	M	P49728	GO:0009512
d1q90m_	M	P23230	GO:0009512
d1q90m_	M	Q08362	GO:0009512
d1q90m_	M	P50369	GO:0009512
d1q90m_	M	Q42496	GO:0009512
d1q90m_	M	P0C1D4	GO:0009512
d1q90m_	M	P23577	GO:0009512
d1q90m_	M	Q00471	GO:0009512
d1q90m_	M	P49728	GO:0009512
d1q90m_	M	P23230	GO:0009512
d1q90m_	M	Q08362	GO:0009512
d1q90m_	M	P50369	GO:0009512
d1q90m_	M	Q42496	GO:0009512
d1q90m_	M	P0C1D4	GO:0009512

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E	A	E	F	I	A	G	T	A	L	T	M	V	G	M	T	L	V	G	L	A	I	G	F	V	L	L	R	V	E	S	L	V	E
-	M	S	G	E	L	L	N	A	A	L	L	S	F	G	L	I	F	V	G	W	A	L	G	A	L	L	L	K	I	Q	G	A	-