PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1j3ma-  (   3 )       gMrktlkatlaeAraqVeaaLkeegFgIlteidvaatlkaklglekp
d1q9ua-  (   0 )    amfhytvdVstgmneTierLeesLkqegFgvlwqfsvteklqekgldfst
                        bbbb    aaaaaaaaaaaaaa      bbbbaaaaaaa       

                             60        70        80        90        100 
d1j3ma-  (  50 )    pyliLGAcnpnLaarAlealpeIglllpcnVvLreaeegVeVlIqDpkem
d1q9ua-  (  50 )    pmviLeV-npqeaarVlnenllVgyflp-kLvVyqengtTkIgMpkptml
                     bbbbb   aaaaaaaaaa 333333    bbbbbb  bbbbbb  aaaa

                             110       120       130 
d1j3ma-  ( 100 )    frvlpeatqraLapvAeeartrLsrAlsrl 
d1q9ua-  ( 100 )    Vgmmn---dpaLkeiAadiekrlaaCLdrCr
                             aaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1j3ma- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1j3ma- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein TT1751 (TTHA1732)	TT1751-like	Thermus thermophilus HB8 [TaxId: 300852]		view
d1q9ua- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1q9ua- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Unnamed hypothetical protein	TT1751-like	Bacillus stearothermophilus [TaxId: 1422]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	G	M	R	K	T	L	K	A	T	L	A	E	A	R	A	Q	V	E	A	A	L	K	E	E	G	F	G	I	L	T	E	I	D	V	A	A	T	L	K	A	K	L	G	L	E	K	P	P	Y	L	I	L	G	A	C	N	P	N	L	A	A	R	A	L	E	A	L	P	E	I	G	L	L	L	P	C	N	V	V	L	R	E	A	E	E	G	V	E	V	L	I	Q	D	P	K	E	M	F	R	V	L	P	E	A	T	Q	R	A	L	A	P	V	A	E	E	A	R	T	R	L	S	R	A	L	S	R	L	-
A	M	F	H	Y	T	V	D	V	S	T	G	M	N	E	T	I	E	R	L	E	E	S	L	K	Q	E	G	F	G	V	L	W	Q	F	S	V	T	E	K	L	Q	E	K	G	L	D	F	S	T	P	M	V	I	L	E	V	-	N	P	Q	E	A	A	R	V	L	N	E	N	L	L	V	G	Y	F	L	P	-	K	L	V	V	Y	Q	E	N	G	T	T	K	I	G	M	P	K	P	T	M	L	V	G	M	M	N	-	-	-	D	P	A	L	K	E	I	A	A	D	I	E	K	R	L	A	A	C	L	D	R	C	R

Member	Chain	UniProtKB	GO term
d1q9ua_	A	Q5KY88	GO:0046872

									10										20										30										40										50										60										70										80										90										100										110										120										130
-	-	-	G	M	R	K	T	L	K	A	T	L	A	E	A	R	A	Q	V	E	A	A	L	K	E	E	G	F	G	I	L	T	E	I	D	V	A	A	T	L	K	A	K	L	G	L	E	K	P	P	Y	L	I	L	G	A	C	N	P	N	L	A	A	R	A	L	E	A	L	P	E	I	G	L	L	L	P	C	N	V	V	L	R	E	A	E	E	G	V	E	V	L	I	Q	D	P	K	E	M	F	R	V	L	P	E	A	T	Q	R	A	L	A	P	V	A	E	E	A	R	T	R	L	S	R	A	L	S	R	L	-
A	M	F	H	Y	T	V	D	V	S	T	G	M	N	E	T	I	E	R	L	E	E	S	L	K	Q	E	G	F	G	V	L	W	Q	F	S	V	T	E	K	L	Q	E	K	G	L	D	F	S	T	P	M	V	I	L	E	V	-	N	P	Q	E	A	A	R	V	L	N	E	N	L	L	V	G	Y	F	L	P	-	K	L	V	V	Y	Q	E	N	G	T	T	K	I	G	M	P	K	P	T	M	L	V	G	M	M	N	-	-	-	D	P	A	L	K	E	I	A	A	D	I	E	K	R	L	A	A	C	L	D	R	C	R

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-	-	-	G	M	R	K	T	L	K	A	T	L	A	E	A	R	A	Q	V	E	A	A	L	K	E	E	G	F	G	I	L	T	E	I	D	V	A	A	T	L	K	A	K	L	G	L	E	K	P	P	Y	L	I	L	G	A	C	N	P	N	L	A	A	R	A	L	E	A	L	P	E	I	G	L	L	L	P	C	N	V	V	L	R	E	A	E	E	G	V	E	V	L	I	Q	D	P	K	E	M	F	R	V	L	P	E	A	T	Q	R	A	L	A	P	V	A	E	E	A	R	T	R	L	S	R	A	L	S	R	L	-
A	M	F	H	Y	T	V	D	V	S	T	G	M	N	E	T	I	E	R	L	E	E	S	L	K	Q	E	G	F	G	V	L	W	Q	F	S	V	T	E	K	L	Q	E	K	G	L	D	F	S	T	P	M	V	I	L	E	V	-	N	P	Q	E	A	A	R	V	L	N	E	N	L	L	V	G	Y	F	L	P	-	K	L	V	V	Y	Q	E	N	G	T	T	K	I	G	M	P	K	P	T	M	L	V	G	M	M	N	-	-	-	D	P	A	L	K	E	I	A	A	D	I	E	K	R	L	A	A	C	L	D	R	C	R

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-	-	-	G	M	R	K	T	L	K	A	T	L	A	E	A	R	A	Q	V	E	A	A	L	K	E	E	G	F	G	I	L	T	E	I	D	V	A	A	T	L	K	A	K	L	G	L	E	K	P	P	Y	L	I	L	G	A	C	N	P	N	L	A	A	R	A	L	E	A	L	P	E	I	G	L	L	L	P	C	N	V	V	L	R	E	A	E	E	G	V	E	V	L	I	Q	D	P	K	E	M	F	R	V	L	P	E	A	T	Q	R	A	L	A	P	V	A	E	E	A	R	T	R	L	S	R	A	L	S	R	L	-
A	M	F	H	Y	T	V	D	V	S	T	G	M	N	E	T	I	E	R	L	E	E	S	L	K	Q	E	G	F	G	V	L	W	Q	F	S	V	T	E	K	L	Q	E	K	G	L	D	F	S	T	P	M	V	I	L	E	V	-	N	P	Q	E	A	A	R	V	L	N	E	N	L	L	V	G	Y	F	L	P	-	K	L	V	V	Y	Q	E	N	G	T	T	K	I	G	M	P	K	P	T	M	L	V	G	M	M	N	-	-	-	D	P	A	L	K	E	I	A	A	D	I	E	K	R	L	A	A	C	L	D	R	C	R