PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2qrda-  ( 450 )    n--------------------------------------kwhfgvrcrgd
d2v8qa1  ( 396 )                                            whlgirsqsr
d3osea-  ( 697 )                                     prslrftwsmkttssmd
d3t4na-  ( 465 )    stvsilptslpqihranmlaqgspaaskisplvtkksktrwhfgirsrsy
                                                                bbb   

                             60        70        80        90        100 
d2qrda-  ( 462 )    apeillaVyrALqrAgAqftvpkpvngysdmytIkSrWeIphckregknT
d2v8qa1  ( 406 )    pndimaeVcrAIkqldYewkvvn-------pyyLrVrrknpvts-----t
d3osea-  ( 714 )    pndMM-eIrkvLdannCdyeqke-------rflLfCvhgdarqd-----s
d3t4na-  ( 515 )    pldVmgeIyiALknlgAewakps-----edlwtIkLrWkyi-------pd
                    aaaaaaaaaaaaaa   bb             bbbbbb            

                             110       120       130       140       150 
d2qrda-  ( 514 )    yAyIeLqLyevm--pgcfmLdvksngykdiy--skssfpfldLcamLvck
d2v8qa1  ( 444 )    fSkMsLqLyqv-ds-rtylLdFrsiddevaprpgshtieffeMcanLiki
d3osea-  ( 752 )    lVqWeMEVCkL-prlslnGVrfkrisgt--------siafkniaskIane
d3t4na-  ( 565 )    lMkMvIqLfqie--tnnylVdFkfdgwesst--f-saypflhLttkLime
                    bbbbbbbbbbb     bbbbbbbbbb           aaaaaaaaaaaaa

                         
d2qrda-  ( 573 )    lfsa 
d2v8qa1  ( 546 )    La--q
d3osea-  ( 793 )    Ll   
d3t4na-  ( 626 )    lavns

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2qrda- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2qrda- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Snf1-like protein kinase ssp2	Ssp2 C-terminal domain-like	Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]	view
d2v8qa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2v8qa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	5'-AMP-activated protein kinase catalytic subunit alpha-1, AMPK1	Ssp2 C-terminal domain-like	Norway rat (Rattus norvegicus) [TaxId: 10116]	view
d3osea- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3osea- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Kinase associated domain 1, KA1	Human (Homo sapiens) [TaxId: 9606]	view
d3t4na- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3t4na- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Ssp2 C-terminal domain-like	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d2v8qa1	A	P54645	GO:0004679
d2v8qa1	A	O43741	GO:0004679
d2v8qa1	A	P80385	GO:0004679
d2v8qa1	A	P54645	GO:0004679
d2v8qa1	A	O43741	GO:0004679
d2v8qa1	A	P80385	GO:0004679
d2v8qa1	A	P54645	GO:0004679
d2v8qa1	A	O43741	GO:0004679
d2v8qa1	A	P80385	GO:0004679

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