Superfamily : 103088 [ OmpA-like ]
Class : Alpha and beta proteins (a+b)
Fold : Bacillus chorismate mutase-like
# of Members : 9
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1r1ma-  (  68 )                          pqyvdetislsaktL---Fgfdkdslra
d2hqsc2  (  68 )                                       nniVyFdldkydirs
d3oona1  ( 268 )                     aIeveknnkGinLsFd-----IeFypnsfqIlq
d3td3a1  ( 221 )                           eltedlnmeL----rVfFdtnksnikd
d4rhaa-  ( 193 )                            vqtkhftlkSdvL---Fnfnkstlkp
d4zhwa-  (  61 )                                     gmsskvlFgnnldrlnp
d5wtpa1  ( 335 )    ePdekeqkqLnqyAk--tIlFd--------------------tgkatikf
d6jfwa1  (   1 )    d---kqeaeLrrqMegtgVeVqrqgddikLIMpGniT---Fatdsaniap
d7rjja-  ( 428 )                              pdvirLd----sslFdtgkwvlkp
                                                                      

                             60        70        80        90        100 
d1r1ma-  (  93 )    eAqdnLkvlAqrLsrtnIqsVrVEGHtdfmgsdkyNqalSerrAyvVann
d2hqsc2  (  83 )    dfaqmLdahAnfLrsnpsykVtVeGHADergtpeyNislGerRAnaVkmy
d3oona1  ( 296 )    keykkIdlIaklLekfkknnIlIeGHteqfgleee-helSekRAraIGny
d3td3a1  ( 244 )    qykpeIakVAekLseypnAtArIeGHTDntgprklNerlSlaRAnsVksa
d4rhaa-  ( 216 )    eGqqaLdqLysqlsn--pgsvvVlGfTdrigsdayNqglSekrAqsVVdy
d4zhwa-  (  78 )    dsrntltkiArallavdidkvrleGHtdnygdegynqklSerRAesvAav
d5wtpa1  ( 363 )    qSaevLnqIinvLkkypnsrFrIEGHTdstgkkaknmilSqnrAdaVkvy
d6jfwa1  (  45 )    sFyapLnnLAnsFkqynqntIeIVGYtdstgsrqhNmdlSqrrAqsVagy
d7rjja-  ( 449 )    gStkrlvssl-dikarpgwlIvVaGHTDsvgeekaNqllSlkRAesvrdw
                      aaaaaaaaaaa       bbbbb       aaaaaaaaaaaaaaaaaa

                             110       120       130       140       150 
d1r1ma-  ( 143 )    Lvs-ngVpvsrIsavGlGesqaqmtqvÇeaevaklgakvskakkrealia
d2hqsc2  ( 133 )    Lqg-kgVsadqIsivSyGkekpavlgh--------------------dea
d3oona1  ( 346 )    Lik-kvKdkdqIlfkGwgsqk-----------------------------
d3td3a1  ( 294 )    LvneynvdasrLstqGfAwdqpiadnk--------------------tke
d4rhaa-  ( 268 )    Lis-kgipsdkIsarG-gesnpvtgntÇdnvp------------raalid
d4zhwa-  ( 128 )    Fre-AgMpaanievrGlGmskpvadnk--------------------tra
d5wtpa1  ( 413 )    Liq-ggIdagrLeSqGfGpekpiasnk--------------------nkk
d6jfwa1  (  95 )    Lta-qgVdgtrLstrGmGpdqpiasns--------------------tad
d7rjja-  ( 500 )    -rdtgdVpdsÇFavqGygesrpiatnd--------------------tpe
                    aaa     333bbbbb                                aa

                             160       170 
d1r1ma-  ( 192 )    çIepD-rrVDVkIrsiv   
d2hqsc2  ( 162 )    AyskN-RrAvLvy       
d3oona1  ( 377 )    ---aknrrVeITIln     
d3td3a1  ( 324 )    gramN-rRVfAtItgsr   
d4rhaa-  ( 306 )    çLapD-rRVeIevkgvdvv 
d4zhwa-  ( 157 )    grsen-rRvaiivpa     
d5wtpa1  ( 442 )    grelN-rrVeInli      
d6jfwa1  ( 124 )    graqN-rRVEVnLrpv---p
d7rjja-  ( 529 )    gralN-rRVeIsLvpqvdaç
                    a      bbbbbbb
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Outer membrane protein class 4, RmpM, C-terminal domainOmpA-likeNeisseria meningitidis [TaxId: 487]view
automated matchesOmpA-likeEscherichia coli [TaxId: 562]view
automated matchesautomated matchesBorrelia burgdorferi [TaxId: 224326]view
automated matchesautomated matchesAcinetobacter baumannii [TaxId: 470]view
automated matchesautomated matchesSalmonella enterica [TaxId: 99287]view
automated matchesautomated matchesPseudomonas aeruginosa [TaxId: 208964]view
automated matchesautomated matchesCapnocytophaga gingivalis [TaxId: 553178]view
automated matchesautomated matchesPseudomonas aeruginosa [TaxId: 208964]view
automated matchesautomated matchesKlebsiella pneumoniae [TaxId: 72407]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170
- - - - - - - - - - - - - - - - - - - - - - P Q Y V D E T I S L S A K T L - - - F G F D K D S L R A E A Q D N L K V L A Q R L S R T N I Q S V R V E G H T D F M G S D K Y N Q A L S E R R A Y V V A N N L V S - N G V P V S R I S A V G L G E S Q A Q M T Q V C E A E V A K L G A K V S K A K K R E A L I A C I E P D - R R V D V K I R S I V - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - N N I V Y F D L D K Y D I R S D F A Q M L D A H A N F L R S N P S Y K V T V E G H A D E R G T P E Y N I S L G E R R A N A V K M Y L Q G - K G V S A D Q I S I V S Y G K E K P A V L G H - - - - - - - - - - - - - - - - - - - - D E A A Y S K N - R R A V L V Y - - - - - - -
- - - - - - - - - - - - - - - - - A I E V E K N N K G I N L S F D - - - - - I E F Y P N S F Q I L Q K E Y K K I D L I A K L L E K F K K N N I L I E G H T E Q F G L E E E - H E L S E K R A R A I G N Y L I K - K V K D K D Q I L F K G W G S Q K - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - A K N R R V E I T I L N - - - - -
- - - - - - - - - - - - - - - - - - - - - - - E L T E D L N M E L - - - - R V F F D T N K S N I K D Q Y K P E I A K V A E K L S E Y P N A T A R I E G H T D N T G P R K L N E R L S L A R A N S V K S A L V N E Y N V D A S R L S T Q G F A W D Q P I A D N K - - - - - - - - - - - - - - - - - - - - T K E G R A M N - R R V F A T I T G S R - - -
- - - - - - - - - - - - - - - - - - - - - - - - V Q T K H F T L K S D V L - - - F N F N K S T L K P E G Q Q A L D Q L Y S Q L S N - - P G S V V V L G F T D R I G S D A Y N Q G L S E K R A Q S V V D Y L I S - K G I P S D K I S A R G - G E S N P V T G N T C D N V P - - - - - - - - - - - - R A A L I D C L A P D - R R V E I E V K G V D V V -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - G M S S K V L F G N N L D R L N P D S R N T L T K I A R A L L A V D I D K V R L E G H T D N Y G D E G Y N Q K L S E R R A E S V A A V F R E - A G M P A A N I E V R G L G M S K P V A D N K - - - - - - - - - - - - - - - - - - - - T R A G R S E N - R R V A I I V P A - - - - -
E P D E K E Q K Q L N Q Y A K - - T I L F D - - - - - - - - - - - - - - - - - - - - T G K A T I K F Q S A E V L N Q I I N V L K K Y P N S R F R I E G H T D S T G K K A K N M I L S Q N R A D A V K V Y L I Q - G G I D A G R L E S Q G F G P E K P I A S N K - - - - - - - - - - - - - - - - - - - - N K K G R E L N - R R V E I N L I - - - - - -
D - - - K Q E A E L R R Q M E G T G V E V Q R Q G D D I K L I M P G N I T - - - F A T D S A N I A P S F Y A P L N N L A N S F K Q Y N Q N T I E I V G Y T D S T G S R Q H N M D L S Q R R A Q S V A G Y L T A - Q G V D G T R L S T R G M G P D Q P I A S N S - - - - - - - - - - - - - - - - - - - - T A D G R A Q N - R R V E V N L R P V - - - P
- - - - - - - - - - - - - - - - - - - - - - - - - - P D V I R L D - - - - S S L F D T G K W V L K P G S T K R L V S S L - D I K A R P G W L I V V A G H T D S V G E E K A N Q L L S L K R A E S V R D W - R D T G D V P D S C F A V Q G Y G E S R P I A T N D - - - - - - - - - - - - - - - - - - - - T P E G R A L N - R R V E I S L V P Q V D A C

 

 

 

 

 

Member Chain UniProtKB GO term
d1r1ma_ A P0A0V3 GO:0009279
d1r1ma_ A P0A0V3 GO:0016020
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in