Superfamily : 102705 [ NIF3 (NGG1p interacting factor 3)-like ]
Class : Alpha and beta proteins (a/b)
Fold : NIF3 (NGG1p interacting factor 3)-like
# of Members : 6
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1nmoa-  (   2 )        kNteleqlInekLnSaai-sDyApnGlQvegke--tVqkIVTGVtA
d2fywa1  (   2 )        lAseVIqaYeafCpqefS-e-gdsrGlqig-tldkgiqrVV-ALdI
d2gx8a1  (   4 )      iPnGheIislFesmYpkhLAme-gdkiGlqig-aLnkpVrhVLIALdV
d2nyda1  (   1 )       mkIadLmtlLdhhVpfstAes-wDnvgllig-dedveVtGVLTALdC
d2yyba-  (   1 )       mdrdeLvryLdayLriqdfpqDpSlnglQvegkr--tVrkVGAAVdA
d3wsfa1  (   3 )    vvnmkAkeIiefIetfApkdlAie-gdniGlQvgdnldkeIkkLGIALdP
                         aaaaaaaaaaa  333        bbbb          bbbb   

                             60        70        80        90        100 
d1nmoa-  (  45 )    sqaLLdeAvrlgAdAVIVHhGYfwkgespvir--g-krnrlktLlandIN
d2fywa1  (  46 )    reeTVaeAiekgvdLIIVKhAPifr-pikdllasrpqNqIYidLikhdIa
d2gx8a1  (  50 )    teeVVdeAiqlgAnVIIAHhPlifn-plkaihtdkayGkiIekCikndIA
d2nyda1  (  46 )    tleVVnEAiekgynTIISHhPlifk-gvtslka-ngygliIrkLiqhdIN
d2yyba-  (  46 )    geaIFrkAleeeVDFLIVHhGLfw-gkpfpiv--ghhkrrleTLfqggIN
d3wsfa1  (  52 )    slsVIkkAekegVdFLFTHhpLlkd-pirnft--gviykklkiLmendII
                     aaaaaaaaa    bbbb                  aaaaaaaaaa   b

                             110       120       130       140       150 
d1nmoa-  (  93 )    LYGWhlPLdahpeLGNnaqLAalLgIt-vg--------------------
d2fywa1  (  95 )    VYVShtNIDIVen-GLNdwFCq-LgIeettyLqetgp-------------
d2gx8a1  (  99 )    IYAAhtNVDVAkg-GVNdlLAeaLgLqntevLaptyaeemkkVVVfVpvt
d2nyda1  (  94 )    LIAMhtNLdVNpy-GVNmmLAkvMgLknIsiinn-qqdvyykvqe-----
d2yyba-  (  93 )    LYAAhlPLdaHeevGNNfvLAreLgLvdlt--------------------
d3wsfa1  (  99 )    LYSAhtNLDiCkn-GLNdaLAelYnLenpkpLyd----------------
                    bbb  aaaaa     aaaaaaa    b                       

                             160       170       180       190       200 
d1nmoa-  ( 123 )    --------------------------------------------------
d2fywa1  ( 131 )    --------------------------------------------------
d2gx8a1  ( 148 )    haeeVrkaLGdagAGhignyshctfssegtgtfvpqqlerveevrIeTiI
d2nyda1  ( 200 )    -----------------------------------------------fmI
d2yyba-  ( 123 )    --------------------------------------------------
d3wsfa1  ( 132 )    --------------------------------------------------
                                                                      

                             210       220       230       240       250 
d1nmoa-  ( 123 )    --------------------------------eIeplVpwgelt-pvpGl
d2fywa1  ( 131 )    ---------------------------------erGiGRIGnIq-pqtFw
d2gx8a1  ( 209 )    paslqrkVikaMvtaHpyeeVaydvypldnkgetlGlGkIGyLqeemtLg
d2nyda1  ( 203 )    dayqksraeqt---------pvfdFieikqtSl-yGlGVMAevdnqmtLe
d2yyba-  ( 123 )    --------------------------------pwdvgVKGrFpq-ptplL
d3wsfa1  ( 132 )    ----------------------------------nglGrvgiFk--gsfe
                                                          bbbbb     aa

                             260       270       280       290       300 
d1nmoa-  ( 141 )    eLaswIearLgr-kPlwcGdtGpe--vVqrVAWcTGgGq--sfIdsAarf
d2fywa1  ( 147 )    eLaqqVkqvfdldsLrvhyqeddlqkpIsrVAICGgsGq--sfykdAlak
d2gx8a1  ( 259 )    qFaehVkqsLdvkgArvvgk---lddkVrkVAVLGgdGn--kyinqAkfk
d2nyda1  ( 252 )    dFAadIkskLnIpsVrfvge---snqkIkrIAIIGgsGi--gyEyqAvqq
d2yyba-  ( 140 )    qVAdrLgqltgm-qPlvhq-ggld--hVetVILvSGsGT--glLpkV---
d3wsfa1  ( 146 )    eFleiTkkyIh-knPivVkSkeVd--dnFkLAVlSGygLsqssIkyVAe-
                    aaaaaaaaa      bbb          bbbbb          aaaaa  

                             310       320       330       340       350 
d1nmoa-  ( 186 )    gVdAFITGevseqTihsAreqgLHFYaAGhhATErgGIraLSewLnent-
d2fywa1  ( 196 )    gAdVYITGdIyyhtaqdl-sdgLLaLdPghy-IEviFvekIaalLsqwke
d2gx8a1  ( 304 )    gAdVYVTGdMyyhvahdAmmlgLnIVDPghn-VEkvMkqgVqkqLqekVd
d2nyda1  ( 297 )    gAdVFVTGdIkhhdaldAkihgVnLIDInhy-SEyvMkegLktlLmnwFn
d2yyba-  ( 181 )    dAdLFVTGepkhsvfheTferglNVIYAghydTEtfGVkaLAahLearf-
d3wsfa1  ( 192 )    kAdVYLSGdlthhSkilAeelgLVVVdAthysTEVfGLkkFkefLssnL-
                       bbbb    aaaaaaaaa   bbbb        aaaaaaaaaaaaa  

                             360       370 
d1nmoa-  ( 235 )    ----dldVtfidipnpa    
d2fywa1  ( 245 )    dkgwsidIlpsqastnpfhhi
d2gx8a1  ( 353 )    akklnVhIhASqlhtdpfifv
d2nyda1  ( 346 )    iekinidVeAStintdpfqyi
d2yyba-  ( 230 )    ----gLpwvfLdhptgl    
d3wsfa1  ( 241 )    ----dLeIisLdf        
                           bbb
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Hypothetical protein YbgINIF3 (NGG1p interacting factor 3)-likeEscherichia coli [TaxId: 562]view
Hypothetical protein SP1609NIF3 (NGG1p interacting factor 3)-likePneumococcus (Streptococcus pneumoniae) [TaxId: 1313]view
Nif3-related protein BC4286NIF3 (NGG1p interacting factor 3)-likeBacillus cereus [TaxId: 1396]view
automated matchesautomated matchesStaphylococcus aureus [TaxId: 158879]view
automated matchesautomated matchesThermus thermophilus HB8 [TaxId: 300852]view
automated matchesautomated matchesMethanocaldococcus jannaschii [TaxId: 243232]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370
- - - - K N T E L E Q L I N E K L N S A A I - S D Y A P N G L Q V E G K E - - T V Q K I V T G V T A S Q A L L D E A V R L G A D A V I V H H G Y F W K G E S P V I R - - G - K R N R L K T L L A N D I N L Y G W H L P L D A H P E L G N N A Q L A A L L G I T - V G - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - E I E P L V P W G E L T - P V P G L E L A S W I E A R L G R - K P L W C G D T G P E - - V V Q R V A W C T G G G Q - - S F I D S A A R F G V D A F I T G E V S E Q T I H S A R E Q G L H F Y A A G H H A T E R G G I R A L S E W L N E N T - - - - - D L D V T F I D I P N P A - - - -
- - - - L A S E V I Q A Y E A F C P Q E F S - E - G D S R G L Q I G - T L D K G I Q R V V - A L D I R E E T V A E A I E K G V D L I I V K H A P I F R - P I K D L L A S R P Q N Q I Y I D L I K H D I A V Y V S H T N I D I V E N - G L N D W F C Q - L G I E E T T Y L Q E T G P - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - E R G I G R I G N I Q - P Q T F W E L A Q Q V K Q V F D L D S L R V H Y Q E D D L Q K P I S R V A I C G G S G Q - - S F Y K D A L A K G A D V Y I T G D I Y Y H T A Q D L - S D G L L A L D P G H Y - I E V I F V E K I A A L L S Q W K E D K G W S I D I L P S Q A S T N P F H H I
- - I P N G H E I I S L F E S M Y P K H L A M E - G D K I G L Q I G - A L N K P V R H V L I A L D V T E E V V D E A I Q L G A N V I I A H H P L I F N - P L K A I H T D K A Y G K I I E K C I K N D I A I Y A A H T N V D V A K G - G V N D L L A E A L G L Q N T E V L A P T Y A E E M K K V V V F V P V T H A E E V R K A L G D A G A G H I G N Y S H C T F S S E G T G T F V P Q Q L E R V E E V R I E T I I P A S L Q R K V I K A M V T A H P Y E E V A Y D V Y P L D N K G E T L G L G K I G Y L Q E E M T L G Q F A E H V K Q S L D V K G A R V V G K - - - L D D K V R K V A V L G G D G N - - K Y I N Q A K F K G A D V Y V T G D M Y Y H V A H D A M M L G L N I V D P G H N - V E K V M K Q G V Q K Q L Q E K V D A K K L N V H I H A S Q L H T D P F I F V
- - - M K I A D L M T L L D H H V P F S T A E S - W D N V G L L I G - D E D V E V T G V L T A L D C T L E V V N E A I E K G Y N T I I S H H P L I F K - G V T S L K A - N G Y G L I I R K L I Q H D I N L I A M H T N L D V N P Y - G V N M M L A K V M G L K N I S I I N N - Q Q D V Y Y K V Q E - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - F M I D A Y Q K S R A E Q T - - - - - - - - - P V F D F I E I K Q T S L - Y G L G V M A E V D N Q M T L E D F A A D I K S K L N I P S V R F V G E - - - S N Q K I K R I A I I G G S G I - - G Y E Y Q A V Q Q G A D V F V T G D I K H H D A L D A K I H G V N L I D I N H Y - S E Y V M K E G L K T L L M N W F N I E K I N I D V E A S T I N T D P F Q Y I
- - - M D R D E L V R Y L D A Y L R I Q D F P Q D P S L N G L Q V E G K R - - T V R K V G A A V D A G E A I F R K A L E E E V D F L I V H H G L F W - G K P F P I V - - G H H K R R L E T L F Q G G I N L Y A A H L P L D A H E E V G N N F V L A R E L G L V D L T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - P W D V G V K G R F P Q - P T P L L Q V A D R L G Q L T G M - Q P L V H Q - G G L D - - H V E T V I L V S G S G T - - G L L P K V - - - D A D L F V T G E P K H S V F H E T F E R G L N V I Y A G H Y D T E T F G V K A L A A H L E A R F - - - - - G L P W V F L D H P T G L - - - -
V V N M K A K E I I E F I E T F A P K D L A I E - G D N I G L Q V G D N L D K E I K K L G I A L D P S L S V I K K A E K E G V D F L F T H H P L L K D - P I R N F T - - G V I Y K K L K I L M E N D I I L Y S A H T N L D I C K N - G L N D A L A E L Y N L E N P K P L Y D - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - N G L G R V G I F K - - G S F E E F L E I T K K Y I H - K N P I V V K S K E V D - - D N F K L A V L S G Y G L S Q S S I K Y V A E - K A D V Y L S G D L T H H S K I L A E E L G L V V V D A T H Y S T E V F G L K K F K E F L S S N L - - - - - D L E I I S L D F - - - - - - - -

 

 

 

 

 

Member Chain UniProtKB GO term
d1nmoa_ A P0AFP6 GO:0005737
d1nmoa_ A P0AFP6 GO:0005829
d1nmoa_ A P0AFP6 GO:0006281
d1nmoa_ A P0AFP6 GO:0010212
d1nmoa_ A P0AFP6 GO:0034214
d1nmoa_ A P0AFP6 GO:0042802
d1nmoa_ A P0AFP6 GO:0046872
d1nmoa_ A P0AFP6 GO:0060187
d2fywa1 A Q97PK0 GO:0005737
d2fywa1 A Q97PK0 GO:0046872
d2gx8a1 A Q818H0 GO:0005737
d2gx8a1 A Q818H0 GO:0046872
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in