PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3bq9a2  ( 139 )                            rp---q----------eePnMVVCWG
d3uqza2  (  72 )            psFsilddcYpwdLseIydaPvlLfykgnldLLkfpkVAVVG
d5wq3a-  (  42 )    wkhadpwrv------lriqsefvaGfdaLh----------eMpkAVTVfG
                                                                bbbbb 

                             60        70        80        90        100 
d3bq9a2  ( 152 )    ghsIne--ieykYTkdVGyhIGlrgLnICTGCGpgAmkGPMkgAtiGHak
d3uqza2  ( 114 )    sracsk--qgaksVekVIqgL-eneLVIVSGLakgIDtaAH-AAlqn---
d5wq3a-  (  76 )    sarikedhpyYkaGveLGekLvaadYAVVTGGgpGLmeAPNkgAsea---
                            aaaaaaaaaaa       bbbb        aa   aaa    

                             110       120       130       140       150 
d3bq9a2  ( 200 )    qrveggrylGLTepg---iiaaeppnpiV--nelvilp----------di
d3uqza2  ( 158 )    -ggk-TIAVIGTGldvfypkankrlQdyIGndHLVLSeygpgeqplkfHf
d5wq3a-  ( 123 )    -ngl-SVGLgielph--------hlnpyV--dlglnFr----------yf
                           bb                        bbb             a

                             160       170       180       190       200 
d3bq9a2  ( 235 )    ekRLeaFVrcAhGIVIFPgga-gTaeeLlyLLgiLmhpdNqrQsLpVILT
d3uqza2  ( 206 )    paRnrIIaGLCrGVIVAeAkrsgslitCerA-ee---------grdvFAi
d5wq3a-  ( 153 )    fArktMFlkySqAFVCLPGgf-gTldELfeVlcmvqtgkvt--nFpIVLI
                    aaaaaaaaa    bbb      aaaaaaaa                bbb 

                             210       220       230       240       250 
d3bq9a2  ( 284 )    GpasSrdyFealdefIga--tigdeArqlYkiiIddpaaVAqhMhagmaa
d3uqza2  ( 248 )    pgsildglS-dgChhliqe---------gaklVt-----sGqdVlaeFef
d5wq3a-  ( 200 )    gtefWaglvdwIrhrlveegmidekdVdrMlvt-ddldqAvkfIvdaha-
                              aaaaa               bb        aaaaaaa   

                             260      
d3bq9a2  ( 332 )    VkqyRrdsgDayyfNwtL
d3uqza2                               
d5wq3a-  ( 248 )    --------g--------l

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d3bq9a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3bq9a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Idiomarina baltica [TaxId: 314276]	view
d3uqza2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3uqza2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	DNA processing protein A (DprA)	SLOG domain from DNA-Processing proteins	Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]	view
d5wq3a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5wq3a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Corynebacterium glutamicum [TaxId: 1718]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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W	K	H	A	D	P	W	R	V	-	-	-	-	-	-	L	R	I	Q	S	E	F	V	A	G	F	D	A	L	H	-	-	-	-	-	-	-	-	-	-	E	M	P	K	A	V	T	V	F	G	S	A	R	I	K	E	D	H	P	Y	Y	K	A	G	V	E	L	G	E	K	L	V	A	A	D	Y	A	V	V	T	G	G	G	P	G	L	M	E	A	P	N	K	G	A	S	E	A	-	-	-	-	N	G	L	-	S	V	G	L	G	I	E	L	P	H	-	-	-	-	-	-	-	-	H	L	N	P	Y	V	-	-	D	L	G	L	N	F	R	-	-	-	-	-	-	-	-	-	-	Y	F	F	A	R	K	T	M	F	L	K	Y	S	Q	A	F	V	C	L	P	G	G	F	-	G	T	L	D	E	L	F	E	V	L	C	M	V	Q	T	G	K	V	T	-	-	N	F	P	I	V	L	I	G	T	E	F	W	A	G	L	V	D	W	I	R	H	R	L	V	E	E	G	M	I	D	E	K	D	V	D	R	M	L	V	T	-	D	D	L	D	Q	A	V	K	F	I	V	D	A	H	A	-	-	-	-	-	-	-	-	-	G	-	-	-	-	-	-	-	-	L

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W	K	H	A	D	P	W	R	V	-	-	-	-	-	-	L	R	I	Q	S	E	F	V	A	G	F	D	A	L	H	-	-	-	-	-	-	-	-	-	-	E	M	P	K	A	V	T	V	F	G	S	A	R	I	K	E	D	H	P	Y	Y	K	A	G	V	E	L	G	E	K	L	V	A	A	D	Y	A	V	V	T	G	G	G	P	G	L	M	E	A	P	N	K	G	A	S	E	A	-	-	-	-	N	G	L	-	S	V	G	L	G	I	E	L	P	H	-	-	-	-	-	-	-	-	H	L	N	P	Y	V	-	-	D	L	G	L	N	F	R	-	-	-	-	-	-	-	-	-	-	Y	F	F	A	R	K	T	M	F	L	K	Y	S	Q	A	F	V	C	L	P	G	G	F	-	G	T	L	D	E	L	F	E	V	L	C	M	V	Q	T	G	K	V	T	-	-	N	F	P	I	V	L	I	G	T	E	F	W	A	G	L	V	D	W	I	R	H	R	L	V	E	E	G	M	I	D	E	K	D	V	D	R	M	L	V	T	-	D	D	L	D	Q	A	V	K	F	I	V	D	A	H	A	-	-	-	-	-	-	-	-	-	G	-	-	-	-	-	-	-	-	L

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	R	P	-	-	-	Q	-	-	-	-	-	-	-	-	-	-	E	E	P	N	M	V	V	C	W	G	G	H	S	I	N	E	-	-	I	E	Y	K	Y	T	K	D	V	G	Y	H	I	G	L	R	G	L	N	I	C	T	G	C	G	P	G	A	M	K	G	P	M	K	G	A	T	I	G	H	A	K	Q	R	V	E	G	G	R	Y	L	G	L	T	E	P	G	-	-	-	I	I	A	A	E	P	P	N	P	I	V	-	-	N	E	L	V	I	L	P	-	-	-	-	-	-	-	-	-	-	D	I	E	K	R	L	E	A	F	V	R	C	A	H	G	I	V	I	F	P	G	G	A	-	G	T	A	E	E	L	L	Y	L	L	G	I	L	M	H	P	D	N	Q	R	Q	S	L	P	V	I	L	T	G	P	A	S	S	R	D	Y	F	E	A	L	D	E	F	I	G	A	-	-	T	I	G	D	E	A	R	Q	L	Y	K	I	I	I	D	D	P	A	A	V	A	Q	H	M	H	A	G	M	A	A	V	K	Q	Y	R	R	D	S	G	D	A	Y	Y	F	N	W	T	L
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