Superfamily : 102114 [ Radical SAM enzymes ]
Class : Alpha and beta proteins (a/b)
Fold : TIM beta/alpha-barrel
# of Members : 3
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1olta-  (   4 )    qqIdwdlalikyytsYPtaleFsedfgeqaFlqAvary--perpLSLyVh
d1r30a-  (   5 )    p--rwtlsqVtelF------ekplldLlfeAqqvhrqhfdprqVqvStll
d1tv8a-  (   3 )                                       eqikDklgRpIrdLr
                                                                   bbb

                             60        70        80        90        100 
d1olta-  (  59 )    IPFc---hklcyfcgcnkivtr----qqhkAdqYLdaLeqEIvhrAplFa
d1r30a-  (  47 )    SIktGacpedckycpqSsrytg----leaerlmeveqVlesArkakaa--
d1tv8a-  (  18 )    LsVTdrcnFrcdycmpkevfgddfvflpkneLLtfdeMarIAkVYAeL--
                    b                                 aaaaaaaaaaa     

                             110       120       130       140       150 
d1olta-  ( 102 )    gRhVsqLhWGGGtPTYL-nkaQIsrLMklLrenFqFnadAeIsIeVdPre
d1r30a-  (  92 )    --gStRFcMGAawnPherdMpyLeqMVqgVkam-----gLeACMtLgt--
d1tv8a-  (  66 )    --gVkkIrItGGEPLmrr---dLdvLIakLnqid----gIedIGLtTnGl
                         bbbbb            aaaaaaaa           bbbb     

                             160       170       180       190       200 
d1olta-  ( 151 )    IeldvLdhLraegFnrLsMgVqDFnkeVQrl-VnreQdeefIfaLLnhAr
d1r30a-  ( 134 )    LsesqAqrLanagLdYYnHnLDT-SpefYgn-IIttrtyqerldTLekVr
d1tv8a-  ( 107 )    lLkkhGqkLydagLrrInVsLdAiddtlFqsiNnrnikAttIleqIdyAt
                       aaaaaaaa    bbb       aaaaaa a     aaaaaaaaaaaa

                             210       220       230       240       250 
d1olta-  ( 200 )    eigFtsTnIdLiyGLPkQtpesFafTLkrVaeL--nPdrLsVfnYahlpt
d1r30a-  ( 182 )    dAgI-kVCSGGiVgL-gEtvkdrAglLlqLAnlptpPeSVPInmLvkvk-
d1tv8a-  ( 157 )    sigL-nVkVnVvIqk-giNddqIipMLeyFkd--khieIrFiEfmdvgn-
                    a      b  bbb         aaaaaaaaa       bbbbb       

                             260       270       280       290       300 
d1olta-  ( 248 )    ifaaQrkIkdadlPspqqkldIlqeTIafLtqs--------gYqFIGMdh
d1r30a-  ( 229 )    -gTpladnd---dvdafdFIrTIAVARiMMp----------tSyVRLS--
d1tv8a-  ( 202 )    ----------dnGWd-fskVVtkdeMltmIeqhfeIdpvepkyfgEvAkY
                                          aaaaaaa                     

                             310       320       330       340       350 
d1olta-  ( 290 )    FA-rpd--deLAvaqregvLhrnf---qgYttqgdtDlLGMGVsAiSmIG
d1r30a-  ( 263 )    aG-ReqMneqtQamCfmAGANSIf-----Ygc--------kllttpNPe-
d1tv8a-  ( 241 )    yrHk-----------dngvqFGLiTsVsqSfcstctrArLssdGkfyGcl
                                         b                            

                             360       370       380       390       400 
d1olta-  ( 334 )    dcYAqnqkelkqYyqqVdeqGnALwrGiaLtrdDcIRrdVIksLICnFrL
d1r30a-  ( 298 )    ---------edkDlqLFrklglnpqqt                       
d1tv8a-  ( 280 )    fatvdgfnVkafIrs----------------gvtdeeLkeqFkalWqiRd
                             aaaaa                                    

                             410       420       430       440       450 
d1olta-  ( 384 )    dYspieqqwdllFadyFaeDlklLaplakdgLVdvdekgIqVtakGrllI
d1r30a-                                                               
d1tv8a-  ( 314 )    ---------drysdertaqtvanrq                         
                                                                      

                             460 
d1olta-  ( 434 )    rnICmcFDtyl
d1r30a-                        
d1tv8a-                        
                               

 

 

Domain IDNameFamilySourceDomainSTRING-DB
Oxygen-independent coproporphyrinogen III oxidase HemNOxygen-independent coproporphyrinogen III oxidase HemNEscherichia coli [TaxId: 562]view
Biotin synthaseBiotin synthaseEscherichia coli [TaxId: 562]view
Molybdenum cofactor biosynthesis protein A MoaAMoCo biosynthesis proteinsStaphylococcus aureus [TaxId: 1280]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460
Q Q I D W D L A L I K Y Y T S Y P T A L E F S E D F G E Q A F L Q A V A R Y - - P E R P L S L Y V H I P F C - - - H K L C Y F C G C N K I V T R - - - - Q Q H K A D Q Y L D A L E Q E I V H R A P L F A G R H V S Q L H W G G G T P T Y L - N K A Q I S R L M K L L R E N F Q F N A D A E I S I E V D P R E I E L D V L D H L R A E G F N R L S M G V Q D F N K E V Q R L - V N R E Q D E E F I F A L L N H A R E I G F T S T N I D L I Y G L P K Q T P E S F A F T L K R V A E L - - N P D R L S V F N Y A H L P T I F A A Q R K I K D A D L P S P Q Q K L D I L Q E T I A F L T Q S - - - - - - - - G Y Q F I G M D H F A - R P D - - D E L A V A Q R E G V L H R N F - - - Q G Y T T Q G D T D L L G M G V S A I S M I G D C Y A Q N Q K E L K Q Y Y Q Q V D E Q G N A L W R G I A L T R D D C I R R D V I K S L I C N F R L D Y S P I E Q Q W D L L F A D Y F A E D L K L L A P L A K D G L V D V D E K G I Q V T A K G R L L I R N I C M C F D T Y L
P - - R W T L S Q V T E L F - - - - - - E K P L L D L L F E A Q Q V H R Q H F D P R Q V Q V S T L L S I K T G A C P E D C K Y C P Q S S R Y T G - - - - L E A E R L M E V E Q V L E S A R K A K A A - - - - G S T R F C M G A A W N P H E R D M P Y L E Q M V Q G V K A M - - - - - G L E A C M T L G T - - L S E S Q A Q R L A N A G L D Y Y N H N L D T - S P E F Y G N - I I T T R T Y Q E R L D T L E K V R D A G I - K V C S G G I V G L - G E T V K D R A G L L L Q L A N L P T P P E S V P I N M L V K V K - - G T P L A D N D - - - D V D A F D F I R T I A V A R I M M P - - - - - - - - - - T S Y V R L S - - A G - R E Q M N E Q T Q A M C F M A G A N S I F - - - - - Y G C - - - - - - - - K L L T T P N P E - - - - - - - - - - E D K D L Q L F R K L G L N P Q Q T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - E Q I K D K L G R P I R D L R L S V T D R C N F R C D Y C M P K E V F G D D F V F L P K N E L L T F D E M A R I A K V Y A E L - - - - G V K K I R I T G G E P L M R R - - - D L D V L I A K L N Q I D - - - - G I E D I G L T T N G L L L K K H G Q K L Y D A G L R R I N V S L D A I D D T L F Q S I N N R N I K A T T I L E Q I D Y A T S I G L - N V K V N V V I Q K - G I N D D Q I I P M L E Y F K D - - K H I E I R F I E F M D V G N - - - - - - - - - - - D N G W D - F S K V V T K D E M L T M I E Q H F E I D P V E P K Y F G E V A K Y Y R H K - - - - - - - - - - - D N G V Q F G L I T S V S Q S F C S T C T R A R L S S D G K F Y G C L F A T V D G F N V K A F I R S - - - - - - - - - - - - - - - - G V T D E E L K E Q F K A L W Q I R D - - - - - - - - - D R Y S D E R T A Q T V A N R Q - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

 

 

 

 

 

Member Chain UniProtKB GO term
d1olta_ A P32131 GO:0003824
d1olta_ A P32131 GO:0004109
d1olta_ A P32131 GO:0005737
d1olta_ A P32131 GO:0006779
d1olta_ A P32131 GO:0006782
d1olta_ A P32131 GO:0016491
d1olta_ A P32131 GO:0019353
d1olta_ A P32131 GO:0046872
d1olta_ A P32131 GO:0051536
d1olta_ A P32131 GO:0051539
d1olta_ A P32131 GO:0051989
d1olta_ A P32131 GO:0003824
d1olta_ A P32131 GO:0004109
d1olta_ A P32131 GO:0005737
d1olta_ A P32131 GO:0006779
d1olta_ A P32131 GO:0006782
d1olta_ A P32131 GO:0016491
d1olta_ A P32131 GO:0019353
d1olta_ A P32131 GO:0046872
d1olta_ A P32131 GO:0051536
d1olta_ A P32131 GO:0051539
d1olta_ A P32131 GO:0051989
d1r30a_ A P12996 GO:0003824
d1r30a_ A P12996 GO:0004076
d1r30a_ A P12996 GO:0005506
d1r30a_ A P12996 GO:0005515
d1r30a_ A P12996 GO:0009102
d1r30a_ A P12996 GO:0016740
d1r30a_ A P12996 GO:0042364
d1r30a_ A P12996 GO:0042803
d1r30a_ A P12996 GO:0044272
d1r30a_ A P12996 GO:0046872
d1r30a_ A P12996 GO:0051536
d1r30a_ A P12996 GO:0051537
d1r30a_ A P12996 GO:0051539
d1r30a_ A P12996 GO:0003824
d1r30a_ A P12996 GO:0004076
d1r30a_ A P12996 GO:0005506
d1r30a_ A P12996 GO:0005515
d1r30a_ A P12996 GO:0009102
d1r30a_ A P12996 GO:0016740
d1r30a_ A P12996 GO:0042364
d1r30a_ A P12996 GO:0042803
d1r30a_ A P12996 GO:0044272
d1r30a_ A P12996 GO:0046872
d1r30a_ A P12996 GO:0051536
d1r30a_ A P12996 GO:0051537
d1r30a_ A P12996 GO:0051539
d1tv8a_ A P65388 GO:0003824
d1tv8a_ A P65388 GO:0005525
d1tv8a_ A P65388 GO:0006777
d1tv8a_ A P65388 GO:0016829
d1tv8a_ A P65388 GO:0046872
d1tv8a_ A P65388 GO:0051536
d1tv8a_ A P65388 GO:0051539
d1tv8a_ A P65388 GO:0061798
d1tv8a_ A P65388 GO:0061799
d1tv8a_ A P65388 GO:1904047
d1tv8a_ A P65388 GO:0003824
d1tv8a_ A P65388 GO:0005525
d1tv8a_ A P65388 GO:0006777
d1tv8a_ A P65388 GO:0016829
d1tv8a_ A P65388 GO:0046872
d1tv8a_ A P65388 GO:0051536
d1tv8a_ A P65388 GO:0051539
d1tv8a_ A P65388 GO:0061798
d1tv8a_ A P65388 GO:0061799
d1tv8a_ A P65388 GO:1904047