PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1q7fa-  ( 759 )    ikr-qrMiyhckfGefgvmegqFtePsGVaVnaqNdIIVADTnnhRIQIF
d1rwia1  (  11 )    gqtvLpft-----------gidflsPSgVaVdsagnVYVTSegmGrVVkl
d6xg7a-  (1066 )    ipvYlrkqQlfqlGgrgsepgsFtwPrGLavGpdnsIVVADssnhRVQvF
                                                bbb     bbbbb    bbbbb

                             60        70        80        90        100 
d1q7fa-  ( 808 )    dkeGrfkfqfGecgkrdsqLlyPnrVaVVrnsgdIIVTErspthqIQIYn
d1rwia1  (  52 )    a---gTtvlpFn------gLyqPqgLaVdg-agtVyVTDf--nnrVVtLa
d6xg7a-  (1119 )    dsnGifv-efGeygngegeFd-LAGVaVn--igqyIIADr-ynhrIQVLd
                                             bbb      bbbbb     bbbbb 

                             110       120       130       140       150 
d1q7fa-  ( 858 )    qyGqfvrkfGa-----tiLqhPrGVtVDnkgrIIVVEckvmrVIIFdqnG
d1rwia1  (  94 )    agsnnqtvlpFd-----gLnyPegLaVdtqgAVYVADrgnnrVVkLaags
d6xg7a-  (1167 )    pqGrflrafgsqgtadgkFnyPWGVtTdalgfIYVCDkenhrVQvFqsdG
                          bb             bbbbbb     bbbbb    bbbbb    

                             160       170       180       190       200 
d1q7fa-  ( 903 )    nvlhkfgCs---khLefPngVvVNdkqeIFISDnrahCVkVFnyeGqylr
d1rwia1  ( 140 )    tqtvlpFt-----gLndPdgVaVdnsgnVYVTDtdnnrVVkLeasnnqvv
d6xg7a-  (1217 )    sfvgkfGscgrggqLehPHyIaVSntnrVIVSDSnNhrIQIFdvg--vls
                      bb                bbb     bbbbb333 bbbbb       b

                             210       220       230       240       250 
d1q7fa-  ( 950 )    qIggeg---iTnyPiGVginsngeILIADnhnnFNLTIFtqdgqlisale
d1rwia1  ( 186 )    lpFt------dItaPgIaVDeagTVYVTEt--n-qVvkLlagsttStvLp
d6xg7a-  (1268 )    tvggegsddgqFfPrGVavddqgyIFVADsgnn-rIQIFnpdgsflktfg
                                    bbb     bbbbb     bbbbb       bb  

                             260       270       280       290    
d1q7fa-  ( 997 )    Skv----kHaqCfdValMddgSVVLASk-dyrLyIYrYvqlapvgm
d1rwia1  ( 230 )    Ft-----gLntPlaVaVdsdrTVYVADrgndrVVkltsle      
d6xg7a-  (1318 )    swgsgdseFkgLEGVaiMsngnILVCDrenhRVQVF          
                               bbbbbb     bbbbb    bbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1q7fa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1q7fa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Brain tumor cg10719-pa	NHL repeat	Fruit fly (Drosophila melanogaster) [TaxId: 7227]	view
d1rwia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1rwia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Serine/threonine-protein kinase PknD	NHL repeat	Mycobacterium tuberculosis [TaxId: 1773]	view
d6xg7a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6xg7a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Fruit fly (Drosophila melanogaster) [TaxId: 7227]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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I	K	R	-	Q	R	M	I	Y	H	C	K	F	G	E	F	G	V	M	E	G	Q	F	T	E	P	S	G	V	A	V	N	A	Q	N	D	I	I	V	A	D	T	N	N	H	R	I	Q	I	F	D	K	E	G	R	F	K	F	Q	F	G	E	C	G	K	R	D	S	Q	L	L	Y	P	N	R	V	A	V	V	R	N	S	G	D	I	I	V	T	E	R	S	P	T	H	Q	I	Q	I	Y	N	Q	Y	G	Q	F	V	R	K	F	G	A	-	-	-	-	-	T	I	L	Q	H	P	R	G	V	T	V	D	N	K	G	R	I	I	V	V	E	C	K	V	M	R	V	I	I	F	D	Q	N	G	N	V	L	H	K	F	G	C	S	-	-	-	K	H	L	E	F	P	N	G	V	V	V	N	D	K	Q	E	I	F	I	S	D	N	R	A	H	C	V	K	V	F	N	Y	E	G	Q	Y	L	R	Q	I	G	G	E	G	-	-	-	I	T	N	Y	P	I	G	V	G	I	N	S	N	G	E	I	L	I	A	D	N	H	N	N	F	N	L	T	I	F	T	Q	D	G	Q	L	I	S	A	L	E	S	K	V	-	-	-	-	K	H	A	Q	C	F	D	V	A	L	M	D	D	G	S	V	V	L	A	S	K	-	D	Y	R	L	Y	I	Y	R	Y	V	Q	L	A	P	V	G	M
G	Q	T	V	L	P	F	T	-	-	-	-	-	-	-	-	-	-	-	G	I	D	F	L	S	P	S	G	V	A	V	D	S	A	G	N	V	Y	V	T	S	E	G	M	G	R	V	V	K	L	A	-	-	-	G	T	T	V	L	P	F	N	-	-	-	-	-	-	G	L	Y	Q	P	Q	G	L	A	V	D	G	-	A	G	T	V	Y	V	T	D	F	-	-	N	N	R	V	V	T	L	A	A	G	S	N	N	Q	T	V	L	P	F	D	-	-	-	-	-	G	L	N	Y	P	E	G	L	A	V	D	T	Q	G	A	V	Y	V	A	D	R	G	N	N	R	V	V	K	L	A	A	G	S	T	Q	T	V	L	P	F	T	-	-	-	-	-	G	L	N	D	P	D	G	V	A	V	D	N	S	G	N	V	Y	V	T	D	T	D	N	N	R	V	V	K	L	E	A	S	N	N	Q	V	V	L	P	F	T	-	-	-	-	-	-	D	I	T	A	P	G	I	A	V	D	E	A	G	T	V	Y	V	T	E	T	-	-	N	-	Q	V	V	K	L	L	A	G	S	T	T	S	T	V	L	P	F	T	-	-	-	-	-	G	L	N	T	P	L	A	V	A	V	D	S	D	R	T	V	Y	V	A	D	R	G	N	D	R	V	V	K	L	T	S	L	E	-	-	-	-	-	-
I	P	V	Y	L	R	K	Q	Q	L	F	Q	L	G	G	R	G	S	E	P	G	S	F	T	W	P	R	G	L	A	V	G	P	D	N	S	I	V	V	A	D	S	S	N	H	R	V	Q	V	F	D	S	N	G	I	F	V	-	E	F	G	E	Y	G	N	G	E	G	E	F	D	-	L	A	G	V	A	V	N	-	-	I	G	Q	Y	I	I	A	D	R	-	Y	N	H	R	I	Q	V	L	D	P	Q	G	R	F	L	R	A	F	G	S	Q	G	T	A	D	G	K	F	N	Y	P	W	G	V	T	T	D	A	L	G	F	I	Y	V	C	D	K	E	N	H	R	V	Q	V	F	Q	S	D	G	S	F	V	G	K	F	G	S	C	G	R	G	G	Q	L	E	H	P	H	Y	I	A	V	S	N	T	N	R	V	I	V	S	D	S	N	N	H	R	I	Q	I	F	D	V	G	-	-	V	L	S	T	V	G	G	E	G	S	D	D	G	Q	F	F	P	R	G	V	A	V	D	D	Q	G	Y	I	F	V	A	D	S	G	N	N	-	R	I	Q	I	F	N	P	D	G	S	F	L	K	T	F	G	S	W	G	S	G	D	S	E	F	K	G	L	E	G	V	A	I	M	S	N	G	N	I	L	V	C	D	R	E	N	H	R	V	Q	V	F	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

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I	K	R	-	Q	R	M	I	Y	H	C	K	F	G	E	F	G	V	M	E	G	Q	F	T	E	P	S	G	V	A	V	N	A	Q	N	D	I	I	V	A	D	T	N	N	H	R	I	Q	I	F	D	K	E	G	R	F	K	F	Q	F	G	E	C	G	K	R	D	S	Q	L	L	Y	P	N	R	V	A	V	V	R	N	S	G	D	I	I	V	T	E	R	S	P	T	H	Q	I	Q	I	Y	N	Q	Y	G	Q	F	V	R	K	F	G	A	-	-	-	-	-	T	I	L	Q	H	P	R	G	V	T	V	D	N	K	G	R	I	I	V	V	E	C	K	V	M	R	V	I	I	F	D	Q	N	G	N	V	L	H	K	F	G	C	S	-	-	-	K	H	L	E	F	P	N	G	V	V	V	N	D	K	Q	E	I	F	I	S	D	N	R	A	H	C	V	K	V	F	N	Y	E	G	Q	Y	L	R	Q	I	G	G	E	G	-	-	-	I	T	N	Y	P	I	G	V	G	I	N	S	N	G	E	I	L	I	A	D	N	H	N	N	F	N	L	T	I	F	T	Q	D	G	Q	L	I	S	A	L	E	S	K	V	-	-	-	-	K	H	A	Q	C	F	D	V	A	L	M	D	D	G	S	V	V	L	A	S	K	-	D	Y	R	L	Y	I	Y	R	Y	V	Q	L	A	P	V	G	M
G	Q	T	V	L	P	F	T	-	-	-	-	-	-	-	-	-	-	-	G	I	D	F	L	S	P	S	G	V	A	V	D	S	A	G	N	V	Y	V	T	S	E	G	M	G	R	V	V	K	L	A	-	-	-	G	T	T	V	L	P	F	N	-	-	-	-	-	-	G	L	Y	Q	P	Q	G	L	A	V	D	G	-	A	G	T	V	Y	V	T	D	F	-	-	N	N	R	V	V	T	L	A	A	G	S	N	N	Q	T	V	L	P	F	D	-	-	-	-	-	G	L	N	Y	P	E	G	L	A	V	D	T	Q	G	A	V	Y	V	A	D	R	G	N	N	R	V	V	K	L	A	A	G	S	T	Q	T	V	L	P	F	T	-	-	-	-	-	G	L	N	D	P	D	G	V	A	V	D	N	S	G	N	V	Y	V	T	D	T	D	N	N	R	V	V	K	L	E	A	S	N	N	Q	V	V	L	P	F	T	-	-	-	-	-	-	D	I	T	A	P	G	I	A	V	D	E	A	G	T	V	Y	V	T	E	T	-	-	N	-	Q	V	V	K	L	L	A	G	S	T	T	S	T	V	L	P	F	T	-	-	-	-	-	G	L	N	T	P	L	A	V	A	V	D	S	D	R	T	V	Y	V	A	D	R	G	N	D	R	V	V	K	L	T	S	L	E	-	-	-	-	-	-
I	P	V	Y	L	R	K	Q	Q	L	F	Q	L	G	G	R	G	S	E	P	G	S	F	T	W	P	R	G	L	A	V	G	P	D	N	S	I	V	V	A	D	S	S	N	H	R	V	Q	V	F	D	S	N	G	I	F	V	-	E	F	G	E	Y	G	N	G	E	G	E	F	D	-	L	A	G	V	A	V	N	-	-	I	G	Q	Y	I	I	A	D	R	-	Y	N	H	R	I	Q	V	L	D	P	Q	G	R	F	L	R	A	F	G	S	Q	G	T	A	D	G	K	F	N	Y	P	W	G	V	T	T	D	A	L	G	F	I	Y	V	C	D	K	E	N	H	R	V	Q	V	F	Q	S	D	G	S	F	V	G	K	F	G	S	C	G	R	G	G	Q	L	E	H	P	H	Y	I	A	V	S	N	T	N	R	V	I	V	S	D	S	N	N	H	R	I	Q	I	F	D	V	G	-	-	V	L	S	T	V	G	G	E	G	S	D	D	G	Q	F	F	P	R	G	V	A	V	D	D	Q	G	Y	I	F	V	A	D	S	G	N	N	-	R	I	Q	I	F	N	P	D	G	S	F	L	K	T	F	G	S	W	G	S	G	D	S	E	F	K	G	L	E	G	V	A	I	M	S	N	G	N	I	L	V	C	D	R	E	N	H	R	V	Q	V	F	-	-	-	-	-	-	-	-	-	-

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I	K	R	-	Q	R	M	I	Y	H	C	K	F	G	E	F	G	V	M	E	G	Q	F	T	E	P	S	G	V	A	V	N	A	Q	N	D	I	I	V	A	D	T	N	N	H	R	I	Q	I	F	D	K	E	G	R	F	K	F	Q	F	G	E	C	G	K	R	D	S	Q	L	L	Y	P	N	R	V	A	V	V	R	N	S	G	D	I	I	V	T	E	R	S	P	T	H	Q	I	Q	I	Y	N	Q	Y	G	Q	F	V	R	K	F	G	A	-	-	-	-	-	T	I	L	Q	H	P	R	G	V	T	V	D	N	K	G	R	I	I	V	V	E	C	K	V	M	R	V	I	I	F	D	Q	N	G	N	V	L	H	K	F	G	C	S	-	-	-	K	H	L	E	F	P	N	G	V	V	V	N	D	K	Q	E	I	F	I	S	D	N	R	A	H	C	V	K	V	F	N	Y	E	G	Q	Y	L	R	Q	I	G	G	E	G	-	-	-	I	T	N	Y	P	I	G	V	G	I	N	S	N	G	E	I	L	I	A	D	N	H	N	N	F	N	L	T	I	F	T	Q	D	G	Q	L	I	S	A	L	E	S	K	V	-	-	-	-	K	H	A	Q	C	F	D	V	A	L	M	D	D	G	S	V	V	L	A	S	K	-	D	Y	R	L	Y	I	Y	R	Y	V	Q	L	A	P	V	G	M
G	Q	T	V	L	P	F	T	-	-	-	-	-	-	-	-	-	-	-	G	I	D	F	L	S	P	S	G	V	A	V	D	S	A	G	N	V	Y	V	T	S	E	G	M	G	R	V	V	K	L	A	-	-	-	G	T	T	V	L	P	F	N	-	-	-	-	-	-	G	L	Y	Q	P	Q	G	L	A	V	D	G	-	A	G	T	V	Y	V	T	D	F	-	-	N	N	R	V	V	T	L	A	A	G	S	N	N	Q	T	V	L	P	F	D	-	-	-	-	-	G	L	N	Y	P	E	G	L	A	V	D	T	Q	G	A	V	Y	V	A	D	R	G	N	N	R	V	V	K	L	A	A	G	S	T	Q	T	V	L	P	F	T	-	-	-	-	-	G	L	N	D	P	D	G	V	A	V	D	N	S	G	N	V	Y	V	T	D	T	D	N	N	R	V	V	K	L	E	A	S	N	N	Q	V	V	L	P	F	T	-	-	-	-	-	-	D	I	T	A	P	G	I	A	V	D	E	A	G	T	V	Y	V	T	E	T	-	-	N	-	Q	V	V	K	L	L	A	G	S	T	T	S	T	V	L	P	F	T	-	-	-	-	-	G	L	N	T	P	L	A	V	A	V	D	S	D	R	T	V	Y	V	A	D	R	G	N	D	R	V	V	K	L	T	S	L	E	-	-	-	-	-	-
I	P	V	Y	L	R	K	Q	Q	L	F	Q	L	G	G	R	G	S	E	P	G	S	F	T	W	P	R	G	L	A	V	G	P	D	N	S	I	V	V	A	D	S	S	N	H	R	V	Q	V	F	D	S	N	G	I	F	V	-	E	F	G	E	Y	G	N	G	E	G	E	F	D	-	L	A	G	V	A	V	N	-	-	I	G	Q	Y	I	I	A	D	R	-	Y	N	H	R	I	Q	V	L	D	P	Q	G	R	F	L	R	A	F	G	S	Q	G	T	A	D	G	K	F	N	Y	P	W	G	V	T	T	D	A	L	G	F	I	Y	V	C	D	K	E	N	H	R	V	Q	V	F	Q	S	D	G	S	F	V	G	K	F	G	S	C	G	R	G	G	Q	L	E	H	P	H	Y	I	A	V	S	N	T	N	R	V	I	V	S	D	S	N	N	H	R	I	Q	I	F	D	V	G	-	-	V	L	S	T	V	G	G	E	G	S	D	D	G	Q	F	F	P	R	G	V	A	V	D	D	Q	G	Y	I	F	V	A	D	S	G	N	N	-	R	I	Q	I	F	N	P	D	G	S	F	L	K	T	F	G	S	W	G	S	G	D	S	E	F	K	G	L	E	G	V	A	I	M	S	N	G	N	I	L	V	C	D	R	E	N	H	R	V	Q	V	F	-	-	-	-	-	-	-	-	-	-

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I	P	V	Y	L	R	K	Q	Q	L	F	Q	L	G	G	R	G	S	E	P	G	S	F	T	W	P	R	G	L	A	V	G	P	D	N	S	I	V	V	A	D	S	S	N	H	R	V	Q	V	F	D	S	N	G	I	F	V	-	E	F	G	E	Y	G	N	G	E	G	E	F	D	-	L	A	G	V	A	V	N	-	-	I	G	Q	Y	I	I	A	D	R	-	Y	N	H	R	I	Q	V	L	D	P	Q	G	R	F	L	R	A	F	G	S	Q	G	T	A	D	G	K	F	N	Y	P	W	G	V	T	T	D	A	L	G	F	I	Y	V	C	D	K	E	N	H	R	V	Q	V	F	Q	S	D	G	S	F	V	G	K	F	G	S	C	G	R	G	G	Q	L	E	H	P	H	Y	I	A	V	S	N	T	N	R	V	I	V	S	D	S	N	N	H	R	I	Q	I	F	D	V	G	-	-	V	L	S	T	V	G	G	E	G	S	D	D	G	Q	F	F	P	R	G	V	A	V	D	D	Q	G	Y	I	F	V	A	D	S	G	N	N	-	R	I	Q	I	F	N	P	D	G	S	F	L	K	T	F	G	S	W	G	S	G	D	S	E	F	K	G	L	E	G	V	A	I	M	S	N	G	N	I	L	V	C	D	R	E	N	H	R	V	Q	V	F	-	-	-	-	-	-	-	-	-	-