PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1rqpa1  ( 193 )    paveqdgeAlvgvVsaIdhpfGNVwTnIhrtdLekagigygarLrLtLdg
d2q6ka2  ( 177 )               geVvridrafGnVwTnipthlig--------rleVkIls
                                 bbbb      bbbbbbaaaa          bbbbb  

                             60        70        80        90        100 
d1rqpa1  ( 243 )    vlpfeapLtptfadageigniAIYlNsrgyLSIArnaasLAypyhLkegm
d2q6ka2  ( 217 )    dtvleLpfcktfgev-degqpLLylnsrgrLALGLnqsnFiekwpVvpgd
                     bbbbb     333      bbbbb    bbbbbb     aaa       

                          
d1rqpa1  ( 293 )    sArVea
d2q6ka2  ( 266 )    sItVsp
                      bbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1rqpa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1rqpa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	5'-fluoro-5'-deoxyadenosine synthase	Bacterial fluorinating enzyme, C-terminal domain	Streptomyces cattleya [TaxId: 29303]		view
d2q6ka2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2q6ka2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Salinispora tropica [TaxId: 369723]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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P	A	V	E	Q	D	G	E	A	L	V	G	V	V	S	A	I	D	H	P	F	G	N	V	W	T	N	I	H	R	T	D	L	E	K	A	G	I	G	Y	G	A	R	L	R	L	T	L	D	G	V	L	P	F	E	A	P	L	T	P	T	F	A	D	A	G	E	I	G	N	I	A	I	Y	L	N	S	R	G	Y	L	S	I	A	R	N	A	A	S	L	A	Y	P	Y	H	L	K	E	G	M	S	A	R	V	E	A
-	-	-	-	-	-	-	-	-	-	-	G	E	V	V	R	I	D	R	A	F	G	N	V	W	T	N	I	P	T	H	L	I	G	-	-	-	-	-	-	-	-	R	L	E	V	K	I	L	S	D	T	V	L	E	L	P	F	C	K	T	F	G	E	V	-	D	E	G	Q	P	L	L	Y	L	N	S	R	G	R	L	A	L	G	L	N	Q	S	N	F	I	E	K	W	P	V	V	P	G	D	S	I	T	V	S	P

Member	Chain	UniProtKB	GO term
d1rqpa1	A	Q70GK9	GO:0016740
d1rqpa1	A	Q70GK9	GO:0033846

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P	A	V	E	Q	D	G	E	A	L	V	G	V	V	S	A	I	D	H	P	F	G	N	V	W	T	N	I	H	R	T	D	L	E	K	A	G	I	G	Y	G	A	R	L	R	L	T	L	D	G	V	L	P	F	E	A	P	L	T	P	T	F	A	D	A	G	E	I	G	N	I	A	I	Y	L	N	S	R	G	Y	L	S	I	A	R	N	A	A	S	L	A	Y	P	Y	H	L	K	E	G	M	S	A	R	V	E	A
-	-	-	-	-	-	-	-	-	-	-	G	E	V	V	R	I	D	R	A	F	G	N	V	W	T	N	I	P	T	H	L	I	G	-	-	-	-	-	-	-	-	R	L	E	V	K	I	L	S	D	T	V	L	E	L	P	F	C	K	T	F	G	E	V	-	D	E	G	Q	P	L	L	Y	L	N	S	R	G	R	L	A	L	G	L	N	Q	S	N	F	I	E	K	W	P	V	V	P	G	D	S	I	T	V	S	P

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P	A	V	E	Q	D	G	E	A	L	V	G	V	V	S	A	I	D	H	P	F	G	N	V	W	T	N	I	H	R	T	D	L	E	K	A	G	I	G	Y	G	A	R	L	R	L	T	L	D	G	V	L	P	F	E	A	P	L	T	P	T	F	A	D	A	G	E	I	G	N	I	A	I	Y	L	N	S	R	G	Y	L	S	I	A	R	N	A	A	S	L	A	Y	P	Y	H	L	K	E	G	M	S	A	R	V	E	A
-	-	-	-	-	-	-	-	-	-	-	G	E	V	V	R	I	D	R	A	F	G	N	V	W	T	N	I	P	T	H	L	I	G	-	-	-	-	-	-	-	-	R	L	E	V	K	I	L	S	D	T	V	L	E	L	P	F	C	K	T	F	G	E	V	-	D	E	G	Q	P	L	L	Y	L	N	S	R	G	R	L	A	L	G	L	N	Q	S	N	F	I	E	K	W	P	V	V	P	G	D	S	I	T	V	S	P

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P	A	V	E	Q	D	G	E	A	L	V	G	V	V	S	A	I	D	H	P	F	G	N	V	W	T	N	I	H	R	T	D	L	E	K	A	G	I	G	Y	G	A	R	L	R	L	T	L	D	G	V	L	P	F	E	A	P	L	T	P	T	F	A	D	A	G	E	I	G	N	I	A	I	Y	L	N	S	R	G	Y	L	S	I	A	R	N	A	A	S	L	A	Y	P	Y	H	L	K	E	G	M	S	A	R	V	E	A
-	-	-	-	-	-	-	-	-	-	-	G	E	V	V	R	I	D	R	A	F	G	N	V	W	T	N	I	P	T	H	L	I	G	-	-	-	-	-	-	-	-	R	L	E	V	K	I	L	S	D	T	V	L	E	L	P	F	C	K	T	F	G	E	V	-	D	E	G	Q	P	L	L	Y	L	N	S	R	G	R	L	A	L	G	L	N	Q	S	N	F	I	E	K	W	P	V	V	P	G	D	S	I	T	V	S	P