PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2j98b-  (   5 )        kpgkMkvkatkGeGdggi--tSegnALyNneggrafMYAYvTtkpg
d5ym6a-  (   3 )      elclrnVftaqntAqDfngn--estVkSFyVt--gkkiLVAITstkdn
d7kria1  (   1 )    nnelspvalrqmsCAAgttqtaCtddnAlAyynttkggrfVlALlSdlqd
                             bbbbbbbb          bbbbbbb     bbbbbbb    

                             60        70        80        90        100 
d2j98b-  (  49 )    MkyVkWehdsgv--vtveLepparfvidtptgpqikyLYfvknLnnlrrg
d5ym6a-  (  49 )    L-tVtcltetgk--tvlnLdppmrf---------vvylYFIqnisslnrg
d7kria1  (  51 )    LkwArFpksDgtgtiyteLeppcrfvtdtpkgpkvkyLYFikgLnnlnrg
                       bb           b     bb            bbbb     aaaaa

                             110 
d2j98b-  (  97 )    aVlgyigatv   
d5ym6a-  (  97 )    mVighist     
d7kria1  ( 101 )    mVlgslaatvrlq
                    aaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2j98b- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2j98b- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human coronavirus 229E [TaxId: 11137]	view
d5ym6a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5ym6a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Porcine coronavirus hku15 [TaxId: 1159905]	view
d7kria1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d7kria1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Replicase NSP9	Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110
-	-	-	-	K	P	G	K	M	K	V	K	A	T	K	G	E	G	D	G	G	I	-	-	T	S	E	G	N	A	L	Y	N	N	E	G	G	R	A	F	M	Y	A	Y	V	T	T	K	P	G	M	K	Y	V	K	W	E	H	D	S	G	V	-	-	V	T	V	E	L	E	P	P	A	R	F	V	I	D	T	P	T	G	P	Q	I	K	Y	L	Y	F	V	K	N	L	N	N	L	R	R	G	A	V	L	G	Y	I	G	A	T	V	-	-	-
-	-	E	L	C	L	R	N	V	F	T	A	Q	N	T	A	Q	D	F	N	G	N	-	-	E	S	T	V	K	S	F	Y	V	T	-	-	G	K	K	I	L	V	A	I	T	S	T	K	D	N	L	-	T	V	T	C	L	T	E	T	G	K	-	-	T	V	L	N	L	D	P	P	M	R	F	-	-	-	-	-	-	-	-	-	V	V	Y	L	Y	F	I	Q	N	I	S	S	L	N	R	G	M	V	I	G	H	I	S	T	-	-	-	-	-
N	N	E	L	S	P	V	A	L	R	Q	M	S	C	A	A	G	T	T	Q	T	A	C	T	D	D	N	A	L	A	Y	Y	N	T	T	K	G	G	R	F	V	L	A	L	L	S	D	L	Q	D	L	K	W	A	R	F	P	K	S	D	G	T	G	T	I	Y	T	E	L	E	P	P	C	R	F	V	T	D	T	P	K	G	P	K	V	K	Y	L	Y	F	I	K	G	L	N	N	L	N	R	G	M	V	L	G	S	L	A	A	T	V	R	L	Q

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110
-	-	-	-	K	P	G	K	M	K	V	K	A	T	K	G	E	G	D	G	G	I	-	-	T	S	E	G	N	A	L	Y	N	N	E	G	G	R	A	F	M	Y	A	Y	V	T	T	K	P	G	M	K	Y	V	K	W	E	H	D	S	G	V	-	-	V	T	V	E	L	E	P	P	A	R	F	V	I	D	T	P	T	G	P	Q	I	K	Y	L	Y	F	V	K	N	L	N	N	L	R	R	G	A	V	L	G	Y	I	G	A	T	V	-	-	-
-	-	E	L	C	L	R	N	V	F	T	A	Q	N	T	A	Q	D	F	N	G	N	-	-	E	S	T	V	K	S	F	Y	V	T	-	-	G	K	K	I	L	V	A	I	T	S	T	K	D	N	L	-	T	V	T	C	L	T	E	T	G	K	-	-	T	V	L	N	L	D	P	P	M	R	F	-	-	-	-	-	-	-	-	-	V	V	Y	L	Y	F	I	Q	N	I	S	S	L	N	R	G	M	V	I	G	H	I	S	T	-	-	-	-	-
N	N	E	L	S	P	V	A	L	R	Q	M	S	C	A	A	G	T	T	Q	T	A	C	T	D	D	N	A	L	A	Y	Y	N	T	T	K	G	G	R	F	V	L	A	L	L	S	D	L	Q	D	L	K	W	A	R	F	P	K	S	D	G	T	G	T	I	Y	T	E	L	E	P	P	C	R	F	V	T	D	T	P	K	G	P	K	V	K	Y	L	Y	F	I	K	G	L	N	N	L	N	R	G	M	V	L	G	S	L	A	A	T	V	R	L	Q

									10										20										30										40										50										60										70										80										90										100										110
-	-	-	-	K	P	G	K	M	K	V	K	A	T	K	G	E	G	D	G	G	I	-	-	T	S	E	G	N	A	L	Y	N	N	E	G	G	R	A	F	M	Y	A	Y	V	T	T	K	P	G	M	K	Y	V	K	W	E	H	D	S	G	V	-	-	V	T	V	E	L	E	P	P	A	R	F	V	I	D	T	P	T	G	P	Q	I	K	Y	L	Y	F	V	K	N	L	N	N	L	R	R	G	A	V	L	G	Y	I	G	A	T	V	-	-	-
-	-	E	L	C	L	R	N	V	F	T	A	Q	N	T	A	Q	D	F	N	G	N	-	-	E	S	T	V	K	S	F	Y	V	T	-	-	G	K	K	I	L	V	A	I	T	S	T	K	D	N	L	-	T	V	T	C	L	T	E	T	G	K	-	-	T	V	L	N	L	D	P	P	M	R	F	-	-	-	-	-	-	-	-	-	V	V	Y	L	Y	F	I	Q	N	I	S	S	L	N	R	G	M	V	I	G	H	I	S	T	-	-	-	-	-
N	N	E	L	S	P	V	A	L	R	Q	M	S	C	A	A	G	T	T	Q	T	A	C	T	D	D	N	A	L	A	Y	Y	N	T	T	K	G	G	R	F	V	L	A	L	L	S	D	L	Q	D	L	K	W	A	R	F	P	K	S	D	G	T	G	T	I	Y	T	E	L	E	P	P	C	R	F	V	T	D	T	P	K	G	P	K	V	K	Y	L	Y	F	I	K	G	L	N	N	L	N	R	G	M	V	L	G	S	L	A	A	T	V	R	L	Q

									10										20										30										40										50										60										70										80										90										100										110
-	-	-	-	K	P	G	K	M	K	V	K	A	T	K	G	E	G	D	G	G	I	-	-	T	S	E	G	N	A	L	Y	N	N	E	G	G	R	A	F	M	Y	A	Y	V	T	T	K	P	G	M	K	Y	V	K	W	E	H	D	S	G	V	-	-	V	T	V	E	L	E	P	P	A	R	F	V	I	D	T	P	T	G	P	Q	I	K	Y	L	Y	F	V	K	N	L	N	N	L	R	R	G	A	V	L	G	Y	I	G	A	T	V	-	-	-
-	-	E	L	C	L	R	N	V	F	T	A	Q	N	T	A	Q	D	F	N	G	N	-	-	E	S	T	V	K	S	F	Y	V	T	-	-	G	K	K	I	L	V	A	I	T	S	T	K	D	N	L	-	T	V	T	C	L	T	E	T	G	K	-	-	T	V	L	N	L	D	P	P	M	R	F	-	-	-	-	-	-	-	-	-	V	V	Y	L	Y	F	I	Q	N	I	S	S	L	N	R	G	M	V	I	G	H	I	S	T	-	-	-	-	-
N	N	E	L	S	P	V	A	L	R	Q	M	S	C	A	A	G	T	T	Q	T	A	C	T	D	D	N	A	L	A	Y	Y	N	T	T	K	G	G	R	F	V	L	A	L	L	S	D	L	Q	D	L	K	W	A	R	F	P	K	S	D	G	T	G	T	I	Y	T	E	L	E	P	P	C	R	F	V	T	D	T	P	K	G	P	K	V	K	Y	L	Y	F	I	K	G	L	N	N	L	N	R	G	M	V	L	G	S	L	A	A	T	V	R	L	Q