PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ou8a-  (   5 )         sspkRPylLrayydwLvdn-------sftPyLvVdAtylgVnVP-
d2nysa1  (   4 )    dhirydilaqdalrgvIrkvLgvaatgrLpgdhhFfItFlTgapgVrIsh
                             aaaaaaaaaaaa             bbbbb           

                             60        70        80        90        100 
d1ou8a-  (  42 )    -veyvkdgqivLnLsasaTgnlqltndfIqFnarfkgvsreLyIpMGAAl
d2nysa1  (  56 )    Lkskya--eqtIvIq-hqfwd-kvt-tGFeiGLsfsdtpekLvIpYnAIr
                               bb              bbbbbbbb  bbbbbbbb333bb

                             110       120 
d1ou8a-  (  91 )    AIyArengdGvmFepeeiyd
d2nysa1  ( 104 )    gFyDpsvnfeleFdp     
                    bbbb     bbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1ou8a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ou8a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Stringent starvation protein B, SspB	Stringent starvation protein B, SspB	Haemophilus influenzae [TaxId: 727]		view
d2nysa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2nysa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein AGR_C_3712p	AGR_C_3712p-like	Agrobacterium tumefaciens [TaxId: 358]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120
-	-	-	-	-	S	S	P	K	R	P	Y	L	L	R	A	Y	Y	D	W	L	V	D	N	-	-	-	-	-	-	-	S	F	T	P	Y	L	V	V	D	A	T	Y	L	G	V	N	V	P	-	-	V	E	Y	V	K	D	G	Q	I	V	L	N	L	S	A	S	A	T	G	N	L	Q	L	T	N	D	F	I	Q	F	N	A	R	F	K	G	V	S	R	E	L	Y	I	P	M	G	A	A	L	A	I	Y	A	R	E	N	G	D	G	V	M	F	E	P	E	E	I	Y	D
D	H	I	R	Y	D	I	L	A	Q	D	A	L	R	G	V	I	R	K	V	L	G	V	A	A	T	G	R	L	P	G	D	H	H	F	F	I	T	F	L	T	G	A	P	G	V	R	I	S	H	L	K	S	K	Y	A	-	-	E	Q	T	I	V	I	Q	-	H	Q	F	W	D	-	K	V	T	-	T	G	F	E	I	G	L	S	F	S	D	T	P	E	K	L	V	I	P	Y	N	A	I	R	G	F	Y	D	P	S	V	N	F	E	L	E	F	D	P	-	-	-	-	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110										120
-	-	-	-	-	S	S	P	K	R	P	Y	L	L	R	A	Y	Y	D	W	L	V	D	N	-	-	-	-	-	-	-	S	F	T	P	Y	L	V	V	D	A	T	Y	L	G	V	N	V	P	-	-	V	E	Y	V	K	D	G	Q	I	V	L	N	L	S	A	S	A	T	G	N	L	Q	L	T	N	D	F	I	Q	F	N	A	R	F	K	G	V	S	R	E	L	Y	I	P	M	G	A	A	L	A	I	Y	A	R	E	N	G	D	G	V	M	F	E	P	E	E	I	Y	D
D	H	I	R	Y	D	I	L	A	Q	D	A	L	R	G	V	I	R	K	V	L	G	V	A	A	T	G	R	L	P	G	D	H	H	F	F	I	T	F	L	T	G	A	P	G	V	R	I	S	H	L	K	S	K	Y	A	-	-	E	Q	T	I	V	I	Q	-	H	Q	F	W	D	-	K	V	T	-	T	G	F	E	I	G	L	S	F	S	D	T	P	E	K	L	V	I	P	Y	N	A	I	R	G	F	Y	D	P	S	V	N	F	E	L	E	F	D	P	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120
-	-	-	-	-	S	S	P	K	R	P	Y	L	L	R	A	Y	Y	D	W	L	V	D	N	-	-	-	-	-	-	-	S	F	T	P	Y	L	V	V	D	A	T	Y	L	G	V	N	V	P	-	-	V	E	Y	V	K	D	G	Q	I	V	L	N	L	S	A	S	A	T	G	N	L	Q	L	T	N	D	F	I	Q	F	N	A	R	F	K	G	V	S	R	E	L	Y	I	P	M	G	A	A	L	A	I	Y	A	R	E	N	G	D	G	V	M	F	E	P	E	E	I	Y	D
D	H	I	R	Y	D	I	L	A	Q	D	A	L	R	G	V	I	R	K	V	L	G	V	A	A	T	G	R	L	P	G	D	H	H	F	F	I	T	F	L	T	G	A	P	G	V	R	I	S	H	L	K	S	K	Y	A	-	-	E	Q	T	I	V	I	Q	-	H	Q	F	W	D	-	K	V	T	-	T	G	F	E	I	G	L	S	F	S	D	T	P	E	K	L	V	I	P	Y	N	A	I	R	G	F	Y	D	P	S	V	N	F	E	L	E	F	D	P	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120
-	-	-	-	-	S	S	P	K	R	P	Y	L	L	R	A	Y	Y	D	W	L	V	D	N	-	-	-	-	-	-	-	S	F	T	P	Y	L	V	V	D	A	T	Y	L	G	V	N	V	P	-	-	V	E	Y	V	K	D	G	Q	I	V	L	N	L	S	A	S	A	T	G	N	L	Q	L	T	N	D	F	I	Q	F	N	A	R	F	K	G	V	S	R	E	L	Y	I	P	M	G	A	A	L	A	I	Y	A	R	E	N	G	D	G	V	M	F	E	P	E	E	I	Y	D
D	H	I	R	Y	D	I	L	A	Q	D	A	L	R	G	V	I	R	K	V	L	G	V	A	A	T	G	R	L	P	G	D	H	H	F	F	I	T	F	L	T	G	A	P	G	V	R	I	S	H	L	K	S	K	Y	A	-	-	E	Q	T	I	V	I	Q	-	H	Q	F	W	D	-	K	V	T	-	T	G	F	E	I	G	L	S	F	S	D	T	P	E	K	L	V	I	P	Y	N	A	I	R	G	F	Y	D	P	S	V	N	F	E	L	E	F	D	P	-	-	-	-	-