PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1roca1  (   2 )     siVsllgikVlnnpakFtdpYeFeItFeClesLkhdLeWkLtYvGssrs
d6a6ya-  (   1 )    mseVnVtkViVnnpicdIldpFvFtIeFeAlnkLeadLeWkIfYiSavn-
                       bbbbbbbb    bb    bbbbbbbbb       bbbbbbb      

                             60        70        80        90        100 
d1roca1  (  51 )    lDhdqeLdsilvgpVpvgvnkfvFsAdpPsaelIpasELvsvtvIlLSCs
d6a6ya-  (  56 )    --qdieLdniflGpIergvmmfdYaVnppdYknmdidSVlglQaIlISAN
                        bbbbbbbb     bbbbbbbbb    333         bbbbbbbb

                             110       120       130       140       150 
d1roca1  ( 101 )    YdgreFVrVgYyVnNeYdeeelrenppakVqvdhIvRnIlaekprvtrfn
d6a6ya-  ( 104 )    YkekeFirIaYyMnSfYkdmelrenppvvpqydkIcRhIfvenprivkfs
                    b  bbbbbbbbbbbbbb  aaaaa       333bbbbb     bbbb  

                         
d1roca1  ( 151 )    ivwd 
d6a6ya-  ( 154 )    igWds

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1roca1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1roca1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Anti-silencing protein 1, ASF1	ASF1-like	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view
d6a6ya- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6a6ya- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Plasmodium falciparum [TaxId: 36329]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	S	E	V	N	V	T	K	V	I	V	N	N	P	I	C	D	I	L	D	P	F	V	F	T	I	E	F	E	A	L	N	K	L	E	A	D	L	E	W	K	I	F	Y	I	S	A	V	N	-	-	-	Q	D	I	E	L	D	N	I	F	L	G	P	I	E	R	G	V	M	M	F	D	Y	A	V	N	P	P	D	Y	K	N	M	D	I	D	S	V	L	G	L	Q	A	I	L	I	S	A	N	Y	K	E	K	E	F	I	R	I	A	Y	Y	M	N	S	F	Y	K	D	M	E	L	R	E	N	P	P	V	V	P	Q	Y	D	K	I	C	R	H	I	F	V	E	N	P	R	I	V	K	F	S	I	G	W	D	S

Member	Chain	UniProtKB	GO term

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M	S	E	V	N	V	T	K	V	I	V	N	N	P	I	C	D	I	L	D	P	F	V	F	T	I	E	F	E	A	L	N	K	L	E	A	D	L	E	W	K	I	F	Y	I	S	A	V	N	-	-	-	Q	D	I	E	L	D	N	I	F	L	G	P	I	E	R	G	V	M	M	F	D	Y	A	V	N	P	P	D	Y	K	N	M	D	I	D	S	V	L	G	L	Q	A	I	L	I	S	A	N	Y	K	E	K	E	F	I	R	I	A	Y	Y	M	N	S	F	Y	K	D	M	E	L	R	E	N	P	P	V	V	P	Q	Y	D	K	I	C	R	H	I	F	V	E	N	P	R	I	V	K	F	S	I	G	W	D	S

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M	S	E	V	N	V	T	K	V	I	V	N	N	P	I	C	D	I	L	D	P	F	V	F	T	I	E	F	E	A	L	N	K	L	E	A	D	L	E	W	K	I	F	Y	I	S	A	V	N	-	-	-	Q	D	I	E	L	D	N	I	F	L	G	P	I	E	R	G	V	M	M	F	D	Y	A	V	N	P	P	D	Y	K	N	M	D	I	D	S	V	L	G	L	Q	A	I	L	I	S	A	N	Y	K	E	K	E	F	I	R	I	A	Y	Y	M	N	S	F	Y	K	D	M	E	L	R	E	N	P	P	V	V	P	Q	Y	D	K	I	C	R	H	I	F	V	E	N	P	R	I	V	K	F	S	I	G	W	D	S

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M	S	E	V	N	V	T	K	V	I	V	N	N	P	I	C	D	I	L	D	P	F	V	F	T	I	E	F	E	A	L	N	K	L	E	A	D	L	E	W	K	I	F	Y	I	S	A	V	N	-	-	-	Q	D	I	E	L	D	N	I	F	L	G	P	I	E	R	G	V	M	M	F	D	Y	A	V	N	P	P	D	Y	K	N	M	D	I	D	S	V	L	G	L	Q	A	I	L	I	S	A	N	Y	K	E	K	E	F	I	R	I	A	Y	Y	M	N	S	F	Y	K	D	M	E	L	R	E	N	P	P	V	V	P	Q	Y	D	K	I	C	R	H	I	F	V	E	N	P	R	I	V	K	F	S	I	G	W	D	S