PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2f4mb2  ( 273 )    ghpLeflrnqpqFqqmRqiiqq-npsllpallqqigrenpqllqqIsqhq
d2qshx-  ( 256 )           gLtvedllsLrqvvsgnpealapllenIsarypqlrehimanp
                              aaaaaaaaaaaa  333aaaaaaaaaaa   aaaaaaa a

                             60  
d2f4mb2  ( 322 )    ehFiqMLnepv
d2qshx-  ( 299 )    evfvsmlleav
                    aaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2f4mb2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2f4mb2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	XPC-binding domain	Mouse (Mus musculus) [TaxId: 10090]		view
d2qshx- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2qshx- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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G	H	P	L	E	F	L	R	N	Q	P	Q	F	Q	Q	M	R	Q	I	I	Q	Q	-	N	P	S	L	L	P	A	L	L	Q	Q	I	G	R	E	N	P	Q	L	L	Q	Q	I	S	Q	H	Q	E	H	F	I	Q	M	L	N	E	P	V
-	-	-	-	-	-	-	G	L	T	V	E	D	L	L	S	L	R	Q	V	V	S	G	N	P	E	A	L	A	P	L	L	E	N	I	S	A	R	Y	P	Q	L	R	E	H	I	M	A	N	P	E	V	F	V	S	M	L	L	E	A	V

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60
G	H	P	L	E	F	L	R	N	Q	P	Q	F	Q	Q	M	R	Q	I	I	Q	Q	-	N	P	S	L	L	P	A	L	L	Q	Q	I	G	R	E	N	P	Q	L	L	Q	Q	I	S	Q	H	Q	E	H	F	I	Q	M	L	N	E	P	V
-	-	-	-	-	-	-	G	L	T	V	E	D	L	L	S	L	R	Q	V	V	S	G	N	P	E	A	L	A	P	L	L	E	N	I	S	A	R	Y	P	Q	L	R	E	H	I	M	A	N	P	E	V	F	V	S	M	L	L	E	A	V

									10										20										30										40										50										60
G	H	P	L	E	F	L	R	N	Q	P	Q	F	Q	Q	M	R	Q	I	I	Q	Q	-	N	P	S	L	L	P	A	L	L	Q	Q	I	G	R	E	N	P	Q	L	L	Q	Q	I	S	Q	H	Q	E	H	F	I	Q	M	L	N	E	P	V
-	-	-	-	-	-	-	G	L	T	V	E	D	L	L	S	L	R	Q	V	V	S	G	N	P	E	A	L	A	P	L	L	E	N	I	S	A	R	Y	P	Q	L	R	E	H	I	M	A	N	P	E	V	F	V	S	M	L	L	E	A	V

									10										20										30										40										50										60
G	H	P	L	E	F	L	R	N	Q	P	Q	F	Q	Q	M	R	Q	I	I	Q	Q	-	N	P	S	L	L	P	A	L	L	Q	Q	I	G	R	E	N	P	Q	L	L	Q	Q	I	S	Q	H	Q	E	H	F	I	Q	M	L	N	E	P	V
-	-	-	-	-	-	-	G	L	T	V	E	D	L	L	S	L	R	Q	V	V	S	G	N	P	E	A	L	A	P	L	L	E	N	I	S	A	R	Y	P	Q	L	R	E	H	I	M	A	N	P	E	V	F	V	S	M	L	L	E	A	V