PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1nu9c1  (   1 )    ivtkdyskesrVnenSkygtlisdwyLkgrltsLesqfinAlgiLetyhy
d1nu9c2  ( 146 )                      lkpftdemeekAtarVddlAnkAySVyfA-Fv
                                           aaaaaaaaaaaaaaaaaaaaaaa    

                             60        70        80        90        100 
d1nu9c1  (  51 )    gekeykdAkdkLmtrIlGEdqyllerkkvqyeeykklykkykeenptskv
d1nu9c2  ( 177 )    rdtqhkteAleLkakVdlvlgde---------------------------
                         aaaaaaaaaaaaaaa                              

                             110       120       130       140       150 
d1nu9c1  ( 101 )    kmktfdqYtiedLTmrEyneLteSLksAvkdFekdveiienqhhd     
d1nu9c2  ( 200 )    ------dkphrIsneriekemikdLesiIedFFieTg--------lnkPd
                                  aaaaaaaaaaaaaaaaaaaaaa              

                             160       170       180       190    
d1nu9c1                                                           
d1nu9c2  ( 236 )    nitsydsskhhyknhsegFeaLvkeTreaVtnandsWktkTvkkyg

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1nu9c1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nu9c1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Staphylocoagulase	Staphylocoagulase	Staphylococcus aureus [TaxId: 1280]		view
d1nu9c2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nu9c2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Staphylocoagulase	Staphylocoagulase	Staphylococcus aureus [TaxId: 1280]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	K	P	F	T	D	E	M	E	E	K	A	T	A	R	V	D	D	L	A	N	K	A	Y	S	V	Y	F	A	-	F	V	R	D	T	Q	H	K	T	E	A	L	E	L	K	A	K	V	D	L	V	L	G	D	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	K	P	H	R	I	S	N	E	R	I	E	K	E	M	I	K	D	L	E	S	I	I	E	D	F	F	I	E	T	G	-	-	-	-	-	-	-	-	L	N	K	P	D	N	I	T	S	Y	D	S	S	K	H	H	Y	K	N	H	S	E	G	F	E	A	L	V	K	E	T	R	E	A	V	T	N	A	N	D	S	W	K	T	K	T	V	K	K	Y	G