PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1oksa1  (   2 )     asrsvIrsiikssrleedrkryl-tllddikgandlakfhq-Lvkiik 
d1r4ga-  ( 516 )    kptmhslrlviessplsraekaayvkslskCktdqevkavmelveedies
                       aaaaaaaaaa    aaaaaa   aaa     aaaaaaa         

                       
d1oksa1                
d1r4ga-  ( 566 )    ltn

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1oksa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1oksa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	RNA polymerase alpha subunit	Phosphoprotein XD domain	Measles virus [TaxId: 11234]		view
d1r4ga- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1r4ga- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	RNA polymerase alpha subunit	Phosphoprotein XD domain	Sendai virus [TaxId: 11191]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	A	S	R	S	V	I	R	S	I	I	K	S	S	R	L	E	E	D	R	K	R	Y	L	-	T	L	L	D	D	I	K	G	A	N	D	L	A	K	F	H	Q	-	L	V	K	I	I	K	-	-	-	-
K	P	T	M	H	S	L	R	L	V	I	E	S	S	P	L	S	R	A	E	K	A	A	Y	V	K	S	L	S	K	C	K	T	D	Q	E	V	K	A	V	M	E	L	V	E	E	D	I	E	S	L	T	N

Member	Chain	UniProtKB	GO term
d1r4ga_	A	P04859	GO:0003723
d1r4ga_	A	P04859	GO:0003968
d1r4ga_	A	P04859	GO:0006351
d1r4ga_	A	P04859	GO:0019079

									10										20										30										40										50
-	A	S	R	S	V	I	R	S	I	I	K	S	S	R	L	E	E	D	R	K	R	Y	L	-	T	L	L	D	D	I	K	G	A	N	D	L	A	K	F	H	Q	-	L	V	K	I	I	K	-	-	-	-
K	P	T	M	H	S	L	R	L	V	I	E	S	S	P	L	S	R	A	E	K	A	A	Y	V	K	S	L	S	K	C	K	T	D	Q	E	V	K	A	V	M	E	L	V	E	E	D	I	E	S	L	T	N

									10										20										30										40										50
-	A	S	R	S	V	I	R	S	I	I	K	S	S	R	L	E	E	D	R	K	R	Y	L	-	T	L	L	D	D	I	K	G	A	N	D	L	A	K	F	H	Q	-	L	V	K	I	I	K	-	-	-	-
K	P	T	M	H	S	L	R	L	V	I	E	S	S	P	L	S	R	A	E	K	A	A	Y	V	K	S	L	S	K	C	K	T	D	Q	E	V	K	A	V	M	E	L	V	E	E	D	I	E	S	L	T	N

									10										20										30										40										50
-	A	S	R	S	V	I	R	S	I	I	K	S	S	R	L	E	E	D	R	K	R	Y	L	-	T	L	L	D	D	I	K	G	A	N	D	L	A	K	F	H	Q	-	L	V	K	I	I	K	-	-	-	-
K	P	T	M	H	S	L	R	L	V	I	E	S	S	P	L	S	R	A	E	K	A	A	Y	V	K	S	L	S	K	C	K	T	D	Q	E	V	K	A	V	M	E	L	V	E	E	D	I	E	S	L	T	N