PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1k8ba-  (  39 )                                     eiliegnrtiirnfrel
d2d74b1  (   3 )    idyydyekllekayqelpeNvkhhksrfevpgalVtiegnkTIIenFkdI
                                                      bbbb  bbbb  aaaa

                             60        70        80        90        100 
d1k8ba-  (  56 )    akavnrdeeffAkyllketgsaGnleggrlilqrr               
d2d74b1  (  53 )    AdaLnrdpqhLlkfLlreiataGtlegrrVvLqgrftpylIanklkkyik
                    aaaa    aaaaaaaaaa    bbbb  bbbb                  

                     
d1k8ba-              
d2d74b1  ( 103 )    e

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1k8ba- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1k8ba- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Translation initiation factor 2 beta, aIF2beta, N-terminal domain	Translation initiation factor 2 beta, aIF2beta, N-terminal domain	Methanococcus jannaschii [TaxId: 2190]		view
d2d74b1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2d74b1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Pyrococcus furiosus [TaxId: 186497]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	I	L	I	E	G	N	R	T	I	I	R	N	F	R	E	L	A	K	A	V	N	R	D	E	E	F	F	A	K	Y	L	L	K	E	T	G	S	A	G	N	L	E	G	G	R	L	I	L	Q	R	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
I	D	Y	Y	D	Y	E	K	L	L	E	K	A	Y	Q	E	L	P	E	N	V	K	H	H	K	S	R	F	E	V	P	G	A	L	V	T	I	E	G	N	K	T	I	I	E	N	F	K	D	I	A	D	A	L	N	R	D	P	Q	H	L	L	K	F	L	L	R	E	I	A	T	A	G	T	L	E	G	R	R	V	V	L	Q	G	R	F	T	P	Y	L	I	A	N	K	L	K	K	Y	I	K	E

Member	Chain	UniProtKB	GO term
d1k8ba_	A	Q57562	GO:0003743
d1k8ba_	A	Q57562	GO:0006413

									10										20										30										40										50										60										70										80										90										100
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	I	L	I	E	G	N	R	T	I	I	R	N	F	R	E	L	A	K	A	V	N	R	D	E	E	F	F	A	K	Y	L	L	K	E	T	G	S	A	G	N	L	E	G	G	R	L	I	L	Q	R	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
I	D	Y	Y	D	Y	E	K	L	L	E	K	A	Y	Q	E	L	P	E	N	V	K	H	H	K	S	R	F	E	V	P	G	A	L	V	T	I	E	G	N	K	T	I	I	E	N	F	K	D	I	A	D	A	L	N	R	D	P	Q	H	L	L	K	F	L	L	R	E	I	A	T	A	G	T	L	E	G	R	R	V	V	L	Q	G	R	F	T	P	Y	L	I	A	N	K	L	K	K	Y	I	K	E

									10										20										30										40										50										60										70										80										90										100
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	I	L	I	E	G	N	R	T	I	I	R	N	F	R	E	L	A	K	A	V	N	R	D	E	E	F	F	A	K	Y	L	L	K	E	T	G	S	A	G	N	L	E	G	G	R	L	I	L	Q	R	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
I	D	Y	Y	D	Y	E	K	L	L	E	K	A	Y	Q	E	L	P	E	N	V	K	H	H	K	S	R	F	E	V	P	G	A	L	V	T	I	E	G	N	K	T	I	I	E	N	F	K	D	I	A	D	A	L	N	R	D	P	Q	H	L	L	K	F	L	L	R	E	I	A	T	A	G	T	L	E	G	R	R	V	V	L	Q	G	R	F	T	P	Y	L	I	A	N	K	L	K	K	Y	I	K	E

									10										20										30										40										50										60										70										80										90										100
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	I	L	I	E	G	N	R	T	I	I	R	N	F	R	E	L	A	K	A	V	N	R	D	E	E	F	F	A	K	Y	L	L	K	E	T	G	S	A	G	N	L	E	G	G	R	L	I	L	Q	R	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
I	D	Y	Y	D	Y	E	K	L	L	E	K	A	Y	Q	E	L	P	E	N	V	K	H	H	K	S	R	F	E	V	P	G	A	L	V	T	I	E	G	N	K	T	I	I	E	N	F	K	D	I	A	D	A	L	N	R	D	P	Q	H	L	L	K	F	L	L	R	E	I	A	T	A	G	T	L	E	G	R	R	V	V	L	Q	G	R	F	T	P	Y	L	I	A	N	K	L	K	K	Y	I	K	E