PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1pjua2  (   2 )    açtreçgnlgfGiçrsqgksliypTgçttççtGykgÇyYfgkdgkfvçeG
d4sgbi-  (   1 )                            piçtnççaGykgçnYysangafiçeG
                                                         bbb     bbbb 

                             60        70    
d1pjua2  ( 111 )    esdepk                   
d4sgbi-  (  27 )    qsdpkkpkaÇplnçdphIayskçpr

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1pjua2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1pjua2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Wound-induced proteinase inhibitor-II	Plant proteinase inhibitors	Tomato (Lycopersicon esculentum) [TaxId: 4081]		view
d4sgbi- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4sgbi- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Plant chymotrypsin inhibitor	Plant proteinase inhibitors	Potato (Solanum tuberosum) [TaxId: 4113]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
A	C	T	R	E	C	G	N	L	G	F	G	I	C	R	S	Q	G	K	S	L	I	Y	P	T	G	C	T	T	C	C	T	G	Y	K	G	C	Y	Y	F	G	K	D	G	K	F	V	C	E	G	E	S	D	E	P	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	I	C	T	N	C	C	A	G	Y	K	G	C	N	Y	Y	S	A	N	G	A	F	I	C	E	G	Q	S	D	P	K	K	P	K	A	C	P	L	N	C	D	P	H	I	A	Y	S	K	C	P	R

Member	Chain	UniProtKB	GO term
d1pjua2	A	P05119	GO:0004867
d1pjua2	A	P05119	GO:0004867
d1pjua2	A	P05119	GO:0005576
d1pjua2	A	P05119	GO:0005576
d1pjua2	A	P05119	GO:0010466
d1pjua2	A	P05119	GO:0010466
d4sgbi_	I	P00777	GO:0004867
d4sgbi_	I	P01080	GO:0004867

									10										20										30										40										50										60										70
A	C	T	R	E	C	G	N	L	G	F	G	I	C	R	S	Q	G	K	S	L	I	Y	P	T	G	C	T	T	C	C	T	G	Y	K	G	C	Y	Y	F	G	K	D	G	K	F	V	C	E	G	E	S	D	E	P	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	I	C	T	N	C	C	A	G	Y	K	G	C	N	Y	Y	S	A	N	G	A	F	I	C	E	G	Q	S	D	P	K	K	P	K	A	C	P	L	N	C	D	P	H	I	A	Y	S	K	C	P	R

									10										20										30										40										50										60										70
A	C	T	R	E	C	G	N	L	G	F	G	I	C	R	S	Q	G	K	S	L	I	Y	P	T	G	C	T	T	C	C	T	G	Y	K	G	C	Y	Y	F	G	K	D	G	K	F	V	C	E	G	E	S	D	E	P	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	I	C	T	N	C	C	A	G	Y	K	G	C	N	Y	Y	S	A	N	G	A	F	I	C	E	G	Q	S	D	P	K	K	P	K	A	C	P	L	N	C	D	P	H	I	A	Y	S	K	C	P	R

									10										20										30										40										50										60										70
A	C	T	R	E	C	G	N	L	G	F	G	I	C	R	S	Q	G	K	S	L	I	Y	P	T	G	C	T	T	C	C	T	G	Y	K	G	C	Y	Y	F	G	K	D	G	K	F	V	C	E	G	E	S	D	E	P	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	I	C	T	N	C	C	A	G	Y	K	G	C	N	Y	Y	S	A	N	G	A	F	I	C	E	G	Q	S	D	P	K	K	P	K	A	C	P	L	N	C	D	P	H	I	A	Y	S	K	C	P	R