Align Input Sequence with Genome of a Given Superfamily
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FASTA Format Help
The input sequences must follow these rules:
- The input may or may not have a line starting with '>'.
- If the input sequence does not have a line starting with '>', a line will be added at the top '>user_input_sequence', and the entire input will be considered a single FASTA sequence of amino acids.
- For multiple sequences, each sequence must start with a line beginning with '>' containing a valid description. The allowed characters for the header are "A" to "Z", "a" to "z", "0" to "9", "_", "-", ".", ",", ";","=" and "|" with SPACES between them. Each header must be unique.
- The allowed characters for amino acids sequences are: abcdefghiklmnpqrstuvwxyz * -
- The sequence is not case sensitive.
Here is the description of the letters:
| Letter | Code | Description |
|---|---|---|
| A | ALA | alanine |
| P | PRO | proline |
| B | ASX | aspartate or asparagine |
| Q | GLN | glutamine |
| C | CYS | cystine |
| R | ARG | arginine |
| D | ASP | aspartate |
| S | SER | serine |
| E | GLU | glutamate |
| T | THR | threonine |
| F | PHE | phenylalanine |
| U | — | selenocysteine |
| G | GLY | glycine |
| V | VAL | valine |
| H | HIS | histidine |
| W | TRP | tryptophan |
| I | ILE | isoleucine |
| Y | TYR | tyrosine |
| K | LYS | lysine |
| Z | GLX | glutamate or glutamine |
| L | LEU | leucine |
| X | — | any |
| M | MET | methionine |
| * | — | translation stop |
| N | ASN | asparagine |
| - | — | gap of indeterminate length |