STIFDB - 1000bp Information | TAIR Gene ID: AT3G54890


STIFdb - 1000bp TFmap : AT3G54890

AT3G54890_1000.png


Details of 1000bp TFmap | TAIR Gene ID: AT3G54890

No: Transcription Factor Z - Score Normalisation Score Start Residue End Residue Chromosome Location Orientation
1 Myb_box5_MYB 2.11410.789/ 24622 -599-594 Upstream regionForward
2 Myb_box5_MYB 2.11410.789/ 24622 3944 5'UTRReverse
3 Myb_box5_MYB 2.11410.789/ 24622 159164 5'UTRForward
4 G_ABRE_bZIP 3.992711.166/ 24622 18 5'UTRForward
5 G_box_bHLH 3.49631.600/ 24622 16 5'UTRForward
6 DREB_AP2_EREBP 3.60811.722/ 24622 -864-859 Upstream regionForward
7 G_box2_bZIP 2.15141.685/ 24622 -102-97 Upstream regionReverse
8 Nac_box_NAC 2.80541.547/ 24622 -270-265 Upstream regionForward
9 AuxRE_ARF 2.79812.753/ 24622 3035 5'UTRReverse
10 AuxRE_ARF 2.79812.753/ 24622 -327-322 Upstream regionForward
11 AuxRE_ARF 2.79812.753/ 24622 -353-348 Upstream regionForward
12 HSE1_HSF 0.68912.317/ 24622 -391-384 Upstream regionForward
13 HSE1_HSF 0.68912.317/ 24622 -939-932 Upstream regionForward
14 HSE1_HSF 0.68912.317/ 24622 -889-882 Upstream regionReverse
15 HSE1_HSF 0.68912.317/ 24622 -296-289 Upstream regionReverse


Details about the Gene : AT3G54890:


TAIR IDAT3G54890
Alternate NamesLHCA1
Chromosome Position20352082-20351901(chr3)
Transcription FactorsG_box2_bZIP
HSE1_HSF
Myb_box5_MYB
AuxRE_ARF
Nac_box_NAC
DREB_AP2_EREBP
G_box_bHLH
G_ABRE_bZIP
Experimental Data from
Microarray Database
DRASTIC-COLD, DRASTIC-NACL
References --


Download Sequence Data :

Click here to download AT3G54890 [1000bp + UTR] Region in Fasta format

 
 
           

Contact :

Prof. R. Sowdhamini

STIFDB TEAM :

Prof. R. Sowdhamini | Shameer Khader
Mahantesha Naika B. N. | Oommen K. M.

Last Updated :

15th Oct, 2012