Browse by Transcription Factors:
Various information related to Stress responsive Transcription Factors are provided in STIFDB. Information includes Transcription Family Name, Subfamily Name, Short Description, Stress signals, Name of Cis element, Cis-element sequence, Literature references and LinkOut to related resources that provides more information about these transcription factors re also provided. STIFDB provides a non-redundant collection of abiotic stress responsive genes in Arabidopsis thaliana, with details about probable Transcription Factor Binding Sites in their promoters as predicted by a rigorous Hidden Markov Model based search method called STIF. In response to abiotic stresses like drought, cold, salinity, high light, heat, etc, 10 specific families of transcription factors are known to be involved. HMM-based models are used to identify binding sites of transcription factors belonging to these families. We have also consulted literature to cross-validate the Transcription Factor Binding Sites predicted by the STIF method.
Representative Color | Transcription Factor | Frequency in STIFDB | Search Link |
---|---|---|---|
     | ABRE_ABI3_VP1 |
5 | Link |
     | AuxRE_ARF |
1421 | Link |
     | C_ABRE_bZIP |
251 | Link |
     | DREB_AP2_EREBP |
962 | Link |
     | G_ABRE_bZIP |
176 | Link |
     | G_box1_bZIP |
109 | Link |
     | G_box2_bZIP |
1034 | Link |
     | G_box_bHLH |
941 | Link |
     | GCC_box_AP2_EREBP |
305 | Link |
     | HBE_HB |
193 | Link |
     | HSE1_HSF |
2500 | Link |
     | Myb_box1_MYB |
2342 | Link |
     | Myb_box2_MYB |
1067 | Link |
     | Myb_box3_MYB |
1278 | Link |
     | Myb_box4_MYB |
668 | Link |
     | Myb_box5_MYB |
3148 | Link |
     | Nac_box_NAC |
1031 | Link |
     | N_box_bHLH |
693 | Link |
     | W_box_WRKY |
2106 | Link |
Representative Color | Transcription Factor | Frequency in STIFDB | Search Link |
---|---|---|---|
     | ABRE_AB13_VP1 |
918 | Link |
     | DREB_AP2_EREBP |
671 | Link |
     | ABRE_bZIP |
109 | Link |
     | G_box1_bZIP |
26 | Link |
     | OsIRO2_bHLH |
172 | Link |
     | Nac_box_NAC |
499 | Link |
     | PRE2_WRKY |
11 | Link |
     | PRE4_WRKY |
67 | Link |
Representative Color | Transcription Factor | Frequency in STIFDB | Search Link |
---|---|---|---|
     | DREB_AP2_EREBP |
1078 | Link |
     | ABRE_bZIP |
154 | Link |
     | G_box1_bZIP |
40 | Link |
     | Nac_box_NAC |
797 | Link |