Browse by Transcription Factors:

Various information related to Stress responsive Transcription Factors are provided in STIFDB. Information includes Transcription Family Name, Subfamily Name, Short Description, Stress signals, Name of Cis element, Cis-element sequence, Literature references and LinkOut to related resources that provides more information about these transcription factors re also provided. STIFDB provides a non-redundant collection of abiotic stress responsive genes in Arabidopsis thaliana, with details about probable Transcription Factor Binding Sites in their promoters as predicted by a rigorous Hidden Markov Model based search method called STIF. In response to abiotic stresses like drought, cold, salinity, high light, heat, etc, 10 specific families of transcription factors are known to be involved. HMM-based models are used to identify binding sites of transcription factors belonging to these families. We have also consulted literature to cross-validate the Transcription Factor Binding Sites predicted by the STIF method.


Representative Color Transcription Factor Frequency in STIFDB Search Link
     ABRE_ABI3_VP1
5 Link
     AuxRE_ARF
1421 Link
     C_ABRE_bZIP
251 Link
     DREB_AP2_EREBP
962 Link
     G_ABRE_bZIP
176 Link
     G_box1_bZIP
109 Link
     G_box2_bZIP
1034 Link
     G_box_bHLH
941 Link
     GCC_box_AP2_EREBP
305 Link
     HBE_HB
193 Link
     HSE1_HSF
2500 Link
     Myb_box1_MYB
2342 Link
     Myb_box2_MYB
1067 Link
     Myb_box3_MYB
1278 Link
     Myb_box4_MYB
668 Link
     Myb_box5_MYB
3148 Link
     Nac_box_NAC
1031 Link
     N_box_bHLH
693 Link
     W_box_WRKY
2106 Link

Representative Color Transcription Factor Frequency in STIFDB Search Link
     ABRE_AB13_VP1
918 Link
     DREB_AP2_EREBP
671 Link
     ABRE_bZIP
109 Link
     G_box1_bZIP
26 Link
     OsIRO2_bHLH
172 Link
     Nac_box_NAC
499 Link
     PRE2_WRKY
11 Link
     PRE4_WRKY
67 Link

Representative Color Transcription Factor Frequency in STIFDB Search Link
     DREB_AP2_EREBP
1078 Link
     ABRE_bZIP
154 Link
     G_box1_bZIP
40 Link
     Nac_box_NAC
797 Link

 
 
           

Contact :

Prof. R. Sowdhamini

STIFDB TEAM :

Prof. R. Sowdhamini | Shameer Khader
Mahantesha Naika B. N. | Oommen K. M.

Last Updated :

15th Oct, 2012