3DSwap | Knowledgebase of 3D Domain Swapping in Proteins

Pfam Domains mapped on to the structure: 1JKV

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD

1 A PF05067 Manganese containing catalase PF05067 PF05067

Conserved Domain Database Superfamily Annotations: 1JKV

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD

1 1JKV 153110 cd01051 Mn_catalase - cl00264

2 1JKV 212184 cl00264 Ferritin_like superfamily - -

Structural Details of PDB entry 1JKV

Structural Details of PDB entry 1JKV

PDBid Chains Hinge Swapped Domain

1JKV F,A F:197-202,A:197-202 F:203-266,A:203-266

Swapped-domain interface residues and interactions:

Chains Residues
A 6, 7, 8, 9, 10, 11, 53, 54, 57, 58, 60, 61, 64, 65, 75, 78, 79, 82, 113, 114, 172, 173, 175, 176, 177, 179, 180, 183, 187, 203, 204, 207, 208, 209, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 224, 225, 227, 228, 231, 232, 233, 234, 239, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 260, 261, 262, 263, 264, 265, 266,

B 1, 3, 4, 5, 6, 49, 50, 51, 52, 135, 136, 137, 201,

C 157, 160,

D 1, 3, 4, 5, 6, 49, 50, 51, 52, 135, 136, 137, 192, 201,

E 157, 160,

F 6, 7, 8, 9, 10, 11, 53, 54, 57, 58, 60, 61, 64, 65, 78, 79, 82, 83, 113, 114, 172, 173, 175, 176, 177, 179, 180, 183, 187, 203, 204, 207, 208, 209, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 224, 225, 227, 228, 231, 232, 233, 234, 239, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 260, 261, 262, 263, 264, 265,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 1, 2, 3, 4, 5, 23, 24, 27, 32, 33, 36, 39, 40, 44, 47, 48, 49, 50, 51, 52, 56, 67, 68, 70, 71, 74, 83, 86, 87, 88, 89, 90, 92, 98, 99, 101, 102, 103, 106, 107, 109, 110, 111, 112, 115, 118, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 142, 143, 145, 146, 149, 150, 152, 153, 154, 156, 157, 158, 159, 160, 161, 162, 163, 169, 182, 184, 186, 189, 190, 191, 192, 195, 196, 198, 199, 200, 201, 202,

B 2, 7, 8, 9, 10, 11, 23, 24, 27, 32, 33, 39, 40, 44, 47, 48, 53, 54, 56, 57, 58, 60, 61, 64, 65, 67, 68, 70, 71, 74, 75, 78, 79, 82, 83, 86, 87, 88, 89, 90, 92, 98, 99, 101, 102, 103, 106, 107, 109, 110, 111, 112, 113, 114, 115, 118, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 139, 142, 143, 145, 146, 149, 150, 152, 153, 154, 156, 157, 158, 159, 160, 161, 162, 163, 169, 172, 173, 175, 176, 177, 179, 180, 182, 183, 184, 186, 187, 189, 190, 192, 195, 196, 198, 199, 200, 202, 203, 204, 207, 208, 209, 212, 213, 214, 215, 216, 217, 219, 220, 221, 222, 224, 225, 227, 228, 231, 232, 233, 234, 239, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 260, 261, 262, 263, 264, 265, 266,

C 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 23, 24, 27, 32, 33, 36, 39, 40, 44, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 60, 61, 64, 65, 67, 68, 70, 71, 74, 75, 78, 79, 82, 83, 86, 87, 88, 89, 90, 98, 99, 101, 102, 103, 106, 107, 109, 110, 111, 112, 113, 114, 115, 116, 118, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 142, 143, 145, 146, 149, 150, 152, 153, 154, 156, 158, 159, 161, 162, 163, 169, 172, 173, 175, 176, 177, 179, 180, 182, 183, 184, 186, 187, 189, 190, 191, 192, 195, 196, 198, 199, 200, 201, 202, 203, 204, 207, 208, 209, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 224, 225, 227, 228, 231, 232, 233, 234, 239, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 260, 261, 262, 263, 264, 265, 266,

D 2, 7, 8, 9, 10, 11, 23, 24, 27, 32, 33, 39, 40, 47, 48, 53, 54, 56, 57, 58, 60, 61, 64, 65, 67, 68, 70, 71, 74, 75, 78, 79, 82, 83, 86, 87, 88, 89, 90, 98, 99, 101, 102, 103, 106, 107, 109, 110, 111, 112, 113, 114, 115, 118, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 139, 142, 143, 145, 146, 149, 150, 152, 153, 154, 156, 157, 158, 159, 160, 161, 162, 163, 169, 172, 173, 175, 176, 177, 179, 180, 182, 183, 184, 186, 187, 189, 191, 195, 196, 198, 199, 200, 202, 203, 204, 207, 208, 209, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 224, 225, 227, 228, 231, 232, 233, 234, 239, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 260, 261, 262, 263, 264, 265, 266,

E 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 23, 24, 27, 32, 33, 39, 40, 44, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 60, 61, 64, 65, 67, 68, 70, 71, 74, 75, 78, 79, 82, 83, 86, 87, 88, 89, 90, 98, 99, 101, 102, 103, 106, 107, 109, 110, 111, 112, 113, 114, 115, 118, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 142, 143, 145, 146, 149, 150, 152, 153, 154, 156, 158, 159, 161, 162, 163, 169, 172, 173, 175, 176, 177, 179, 180, 182, 183, 184, 186, 187, 189, 190, 192, 195, 196, 198, 199, 200, 201, 202, 203, 204, 207, 208, 209, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 224, 225, 227, 228, 231, 232, 233, 234, 239, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 260, 261, 262, 263, 264, 265, 266,

F 1, 2, 3, 4, 5, 23, 24, 27, 32, 33, 39, 40, 44, 47, 48, 49, 50, 51, 52, 56, 67, 68, 70, 71, 74, 75, 86, 87, 88, 89, 90, 98, 99, 101, 102, 103, 105, 106, 107, 109, 110, 111, 112, 115, 118, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 139, 142, 143, 145, 146, 149, 150, 152, 153, 154, 156, 157, 158, 159, 160, 161, 162, 163, 169, 182, 184, 186, 189, 190, 191, 192, 195, 196, 198, 199, 200, 201, 202,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain

F No mutation No mutation No mutation No mutation

A No mutation No mutation No mutation No mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

2D-plot:

F:1JKV

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file: 1JKV.ali
atm file: 1JKV.atm
cof file: 1JKV.cof
hbd file: 1JKV.hbd
html file: 1JKV.html
pdb file: 1JKV.pdb
ps file: 1JKV.ps
psa file: 1JKV.psa
rtf file: 1JKV.rtf
sst file: 1JKV.sst
tem file: 1JKV.tem