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STIFDB - Stress Responsive Genes in Chromosome - 07 from Oryza sativa subsp japonica:

No. TAIR IDGenes DescriptionResponsive Transcription FactorStress Elements
1 Os07g0108900 Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. ABRE_AB13_VP1 Nac_box_NAC GEO-IRON ,
2 Os07g0110000 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH ABRE_bZIP PRE4_WRKY GEO-IRON ,
3 Os07g0127500 The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. ABRE_AB13_VP1 GEO-BACTERIAL BLIGHT,
4 Os07g0127600 The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
5 Os07g0129200 The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. ABRE_AB13_VP1 GEO-BACTERIAL BLIGHT,
6 Os07g0129300 The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. ABRE_AB13_VP1 DREB_AP2_EREBP PRE4_WRKY GEO-BACTERIAL BLIGHT,GEO-HEAT,
7 Os07g0147500 A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ). ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
8 Os07g0147900 Catalysis of the reaction: reduced ferredoxin + NADP+ = oxidized ferredoxin + NADPH + H+. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC PRE4_WRKY GEO-HEAT,
9 Os07g0154100 Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. ABRE_AB13_VP1 OsIRO2_bHLH G_box1_bZIP GEO-HEAT,
10 Os07g0164200 Unavailable ABRE_AB13_VP1 PRE4_WRKY GEO-IRON ,
11 Os07g0170200 Interacting selectively and non-covalently with any nucleic acid. ABRE_AB13_VP1 Nac_box_NAC GEO-ABA,GEO-DROUGHT,GEO-SALINITY,
12 Os07g0178700 Unavailable DREB_AP2_EREBP OsIRO2_bHLH GEO-BACTERIAL BLIGHT,GEO-DROUGHT,GEO-HEAT,GEO-COLD,
13 Os07g0181100 Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane. ABRE_AB13_VP1 Nac_box_NAC GEO-IRON ,
14 Os07g0182000 Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). ABRE_AB13_VP1 GEO-HEAT,
15 Os07g0184900 Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). ABRE_AB13_VP1 Nac_box_NAC OsIRO2_bHLH GEO-IRON ,
16 Os07g0188700 Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles may be a single or double lipid bilayer also includes associated proteins. DREB_AP2_EREBP GEO-IRON ,
17 Os07g0189700 A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. Nac_box_NAC GEO-HEAT,
18 Os07g0213800 Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain a serine residue (and a histidine residue) are at the active center of the enzyme. ABRE_AB13_VP1 GEO-BACTERIAL BLIGHT,
19 Os07g0226200 Unavailable DREB_AP2_EREBP GEO-HEAT,
20 Os07g0249800 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH GEO-HEAT,
21 Os07g0258400 Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-IRON ,
22 Os07g0267300 Unavailable ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
23 Os07g0272900 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
24 Os07g0274700 A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. ABRE_AB13_VP1 Nac_box_NAC GEO-DROUGHT,GEO-HEAT,GEO-SALINITY,
25 Os07g0287400 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,
26 Os07g0288700 Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
27 Os07g0298100 Unavailable ABRE_AB13_VP1 Nac_box_NAC PRE4_WRKY GEO-BACTERIAL BLIGHT,
28 Os07g0298900 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
29 Os07g0406800 Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC ABRE_bZIP GEO-BACTERIAL BLIGHT,
30 Os07g0413800 Unavailable ABRE_AB13_VP1 GEO-HEAT,
31 Os07g0416900 Unavailable Nac_box_NAC GEO-HEAT,
32 Os07g0417200 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC PRE4_WRKY GEO-HEAT,
33 Os07g0418600 Unavailable ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
34 Os07g0418700 Functions in the storage of nutritious substrates. ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
35 Os07g0425000 Unavailable DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
36 Os07g0466200 Unavailable ABRE_AB13_VP1 GEO-HEAT,
37 Os07g0475700 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
38 Os07g0479600 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP OsIRO2_bHLH ABRE_bZIP GEO-HEAT,
39 Os07g0489800 Unavailable GEO-BACTERIAL BLIGHT,
40 Os07g0509800 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH ABRE_bZIP GEO-BACTERIAL BLIGHT,
41 Os07g0510400 Unavailable GEO-HEAT,
42 Os07g0510500 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,GEO-IRON ,
43 Os07g0515700 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP GEO-IRON ,
44 Os07g0517900 Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
45 Os07g0526400 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. ABRE_AB13_VP1 Nac_box_NAC GEO-DROUGHT,
46 Os07g0526600 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
47 Os07g0529600 Unavailable ABRE_AB13_VP1 OsIRO2_bHLH GEO-BACTERIAL BLIGHT,
48 Os07g0535200 Unavailable DREB_AP2_EREBP PRE2_WRKY GEO-HEAT,
49 Os07g0537500 Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate. ABRE_AB13_VP1 DREB_AP2_EREBP PRE4_WRKY GEO-BACTERIAL BLIGHT,
50 Os07g0537900 Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH GEO-BACTERIAL BLIGHT,
51 Os07g0538200 Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. ABRE_AB13_VP1 GEO-BACTERIAL BLIGHT,
52 Os07g0539100 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
53 Os07g0539900 Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. ABRE_AB13_VP1 OsIRO2_bHLH GEO-BACTERIAL BLIGHT,
54 Os07g0546000 Catalysis of the reaction: isopentenyl diphosphate = dimethylallyl diphosphate. DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH ABRE_bZIP PRE4_WRKY GEO-BACTERIAL BLIGHT,GEO-HEAT,
55 Os07g0550600 Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). ABRE_AB13_VP1 G_box1_bZIP GEO-BACTERIAL BLIGHT,
56 Os07g0558000 Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. ABRE_AB13_VP1 DREB_AP2_EREBP PRE4_WRKY GEO-IRON ,
57 Os07g0561300 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
58 Os07g0561500 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH GEO-HEAT,
59 Os07g0561800 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP PRE4_WRKY GEO-BACTERIAL BLIGHT,
60 Os07g0564100 Unavailable ABRE_AB13_VP1 Nac_box_NAC GEO-BACTERIAL BLIGHT,
61 Os07g0565800 Interacting selectively and non-covalently with ice, water reduced to the solid state by cold temperature. It is a white or transparent colorless substance, crystalline, brittle, and viscoidal. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
62 Os07g0567400 Interacting selectively and non-covalently with iron (Fe) ions. ABRE_AB13_VP1 DREB_AP2_EREBP OsIRO2_bHLH ABRE_bZIP GEO-HEAT,
63 Os07g0573000 Unavailable ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
64 Os07g0578300 Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
65 Os07g0582700 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH PRE4_WRKY GEO-HEAT,
66 Os07g0587000 Unavailable ABRE_AB13_VP1 OsIRO2_bHLH GEO-BACTERIAL BLIGHT,
67 Os07g0591700 Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
68 Os07g0601900 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
69 Os07g0616800 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
70 Os07g0618700 Unavailable ABRE_AB13_VP1 Nac_box_NAC OsIRO2_bHLH GEO-BACTERIAL BLIGHT,
71 Os07g0619600 Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). ABRE_AB13_VP1 DREB_AP2_EREBP G_box1_bZIP GEO-BACTERIAL BLIGHT,
72 Os07g0626400 Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock. ABRE_AB13_VP1 DREB_AP2_EREBP G_box1_bZIP GEO-BACTERIAL BLIGHT,
73 Os07g0628900 Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. ABRE_AB13_VP1 DREB_AP2_EREBP OsIRO2_bHLH ABRE_bZIP GEO-BACTERIAL BLIGHT,
74 Os07g0633200 Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
75 Os07g0635700 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP GEO-IRON ,
76 Os07g0637300 Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. ABRE_AB13_VP1 Nac_box_NAC GEO-BACTERIAL BLIGHT,
77 Os07g0640900 Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). ABRE_AB13_VP1 Nac_box_NAC GEO-IRON ,
78 Os07g0645000 Tethered to the plasma membrane by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane. ABRE_AB13_VP1 GEO-HEAT,
79 Os07g0655600 The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin in fungi it is composed largely of polysaccharides in bacteria it is composed of peptidoglycan. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
80 Os07g0658300 Unavailable DREB_AP2_EREBP GEO-HEAT,
81 Os07g0659500 The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH GEO-HEAT,
82 Os07g0663800 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
83 Os07g0667300 The living contents of a cell the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. ABRE_AB13_VP1 Nac_box_NAC GEO-IRON ,
84 Os07g0671400 Unavailable ABRE_AB13_VP1 Nac_box_NAC OsIRO2_bHLH GEO-HEAT,
85 Os07g0672500 Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
86 Os07g0674800 Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
87 Os07g0677100 Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
88 Os07g0678600 Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC PRE4_WRKY GEO-BACTERIAL BLIGHT,
89 Os07g0686600 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,
 
 
           

Contact :

Prof. R. Sowdhamini

STIFDB TEAM :

Prof. R. Sowdhamini | Shameer Khader
Mahantesha Naika B. N. | Oommen K. M.

Last Updated :

15th Oct, 2012