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STIFDB - Stress Responsive Genes in Chromosome - 06 from Oryza sativa subsp japonica:

No. TAIR IDGenes DescriptionResponsive Transcription FactorStress Elements
1 Os06g0101600 Interacting selectively and non-covalently with copper (Cu) ions. DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH GEO-IRON ,
2 Os06g0106800 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
3 Os06g0107700 Catalysis of the reaction: reduced ferredoxin + NADP+ = oxidized ferredoxin + NADPH + H+. DREB_AP2_EREBP GEO-IRON ,
4 Os06g0109200 Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles may be a single or double lipid bilayer also includes associated proteins. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-IRON ,
5 Os06g0110200 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
6 Os06g0116900 Unavailable GEO-HEAT,
7 Os06g0121500 Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. ABRE_AB13_VP1 Nac_box_NAC GEO-IRON ,
8 Os06g0133400 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-DROUGHT,GEO-COLD,GEO-SALINITY,
9 Os06g0133500 Unavailable ABRE_AB13_VP1 Nac_box_NAC OsIRO2_bHLH ABRE_bZIP GEO-DROUGHT,GEO-SALINITY,
10 Os06g0142200 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
11 Os06g0142300 Unavailable ABRE_AB13_VP1 OsIRO2_bHLH PRE4_WRKY GEO-HEAT,
12 Os06g0146800 Unavailable ABRE_AB13_VP1 GEO-HEAT,
13 Os06g0146900 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
14 Os06g0151100 Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). ABRE_AB13_VP1 GEO-DROUGHT,
15 Os06g0156700 Unavailable ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
16 Os06g0159900 Unavailable DREB_AP2_EREBP GEO-HEAT,
17 Os06g0167400 Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. DREB_AP2_EREBP OsIRO2_bHLH GEO-BACTERIAL BLIGHT,GEO-HEAT,
18 Os06g0181500 Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. ABRE_AB13_VP1 GEO-HEAT,
19 Os06g0187900 Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. DREB_AP2_EREBP GEO-HEAT,
20 Os06g0195800 Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock. ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
21 Os06g0196300 Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-IRON ,
22 Os06g0198500 Unavailable GEO-DROUGHT,
23 Os06g0216200 Interacting selectively and non-covalently with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-ABA,GEO-DROUGHT,GEO-COLD,GEO-SALINITY,
24 Os06g0216400 The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,
25 Os06g0219500 Unavailable ABRE_AB13_VP1 GEO-DROUGHT,GEO-HEAT,GEO-SALINITY,
26 Os06g0225000 Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-IRON ,
27 Os06g0229800 Catalysis of the reaction: ADP-glucose + (1,4)-alpha-D-glucosyl(n) = ADP + (1,4)-alpha-D-glucosyl(n+1). DREB_AP2_EREBP OsIRO2_bHLH GEO-HEAT,
28 Os06g0231600 Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). ABRE_AB13_VP1 DREB_AP2_EREBP GEO-DROUGHT,
29 Os06g0239200 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP GEO-DROUGHT,
30 Os06g0248500 A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-DROUGHT,
31 Os06g0253100 Unavailable Nac_box_NAC GEO-HEAT,GEO-IRON ,
32 Os06g0264800 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH ABRE_bZIP G_box1_bZIP GEO-IRON ,
33 Os06g0289900 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
34 Os06g0294600 Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,
35 Os06g0298200 The living contents of a cell the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. DREB_AP2_EREBP OsIRO2_bHLH ABRE_bZIP GEO-BACTERIAL BLIGHT,
36 Os06g0316800 Unavailable ABRE_AB13_VP1 GEO-IRON ,
37 Os06g0318600 Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). ABRE_AB13_VP1 GEO-BACTERIAL BLIGHT,GEO-IRON ,
38 Os06g0320500 A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
39 Os06g0345200 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. ABRE_AB13_VP1 DREB_AP2_EREBP OsIRO2_bHLH ABRE_bZIP GEO-BACTERIAL BLIGHT,GEO-HEAT,
40 Os06g0356800 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. ABRE_AB13_VP1 GEO-HEAT,
41 Os06g0474800 Interacting selectively and non-covalently with iron (Fe) ions. ABRE_AB13_VP1 GEO-BACTERIAL BLIGHT,
42 Os06g0476200 The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell. ABRE_AB13_VP1 Nac_box_NAC OsIRO2_bHLH GEO-IRON ,
43 Os06g0483200 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
44 Os06g0498000 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-DROUGHT,
45 Os06g0502900 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH ABRE_bZIP PRE4_WRKY GEO-HEAT,
46 Os06g0507300 Unavailable Nac_box_NAC OsIRO2_bHLH GEO-HEAT,
47 Os06g0530600 Unavailable ABRE_AB13_VP1 G_box1_bZIP GEO-ABA,
48 Os06g0531600 Unavailable ABRE_AB13_VP1 GEO-HEAT,
49 Os06g0546500 Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. ABRE_AB13_VP1 GEO-BACTERIAL BLIGHT,
50 Os06g0547400 Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. ABRE_AB13_VP1 PRE4_WRKY GEO-BACTERIAL BLIGHT,GEO-HEAT,
51 Os06g0549900 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
52 Os06g0562200 Unavailable DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,GEO-HEAT,
53 Os06g0562300 Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). ABRE_AB13_VP1 Nac_box_NAC GEO-DROUGHT,GEO-COLD,
54 Os06g0569500 Unavailable DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH GEO-HEAT,GEO-IRON ,
55 Os06g0573600 Catalysis of the hydrolysis of any O-glycosyl bond. ABRE_AB13_VP1 DREB_AP2_EREBP PRE4_WRKY GEO-HEAT,
56 Os06g0574500 Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. GEO-HEAT,
57 Os06g0586000 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
58 Os06g0590500 Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
59 Os06g0592500 Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,GEO-HEAT,GEO-IRON ,
60 Os06g0593800 Unavailable ABRE_AB13_VP1 GEO-BACTERIAL BLIGHT,GEO-HEAT,
61 Os06g0597600 Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
62 Os06g0607700 Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
63 Os06g0633100 Combining with the neurotransmitter dopamine to initiate a change in cell activity. ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
64 Os06g0653200 A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-IRON ,
65 Os06g0653900 Unavailable ABRE_AB13_VP1 GEO-BACTERIAL BLIGHT,
66 Os06g0656500 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. DREB_AP2_EREBP OsIRO2_bHLH GEO-IRON ,
67 Os06g0661800 Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA. ABRE_AB13_VP1 DREB_AP2_EREBP OsIRO2_bHLH ABRE_bZIP GEO-HEAT,
68 Os06g0678800 Interacting selectively and non-covalently with copper (Cu) ions. ABRE_AB13_VP1 DREB_AP2_EREBP OsIRO2_bHLH GEO-BACTERIAL BLIGHT,
69 Os06g0682900 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
70 Os06g0683000 The living contents of a cell the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH ABRE_bZIP GEO-HEAT,
71 Os06g0683200 The action of a molecule that contributes to the structural integrity of the ribosome. GEO-HEAT,
72 Os06g0691800 Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
73 Os06g0694200 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC PRE4_WRKY GEO-HEAT,
74 Os06g0695700 Interacting selectively and non-covalently with ice, water reduced to the solid state by cold temperature. It is a white or transparent colorless substance, crystalline, brittle, and viscoidal. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH ABRE_bZIP GEO-BACTERIAL BLIGHT,
75 Os06g0700100 Unavailable GEO-IRON ,
76 Os06g0701600 Unavailable ABRE_AB13_VP1 GEO-BACTERIAL BLIGHT,
77 Os06g0704700 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,
78 Os06g0705100 Interacting selectively and non-covalently with ice, water reduced to the solid state by cold temperature. It is a white or transparent colorless substance, crystalline, brittle, and viscoidal. Nac_box_NAC GEO-IRON ,
79 Os06g0716100 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
80 Os06g0725000 Unavailable ABRE_AB13_VP1 GEO-HEAT,
81 Os06g0725300 The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. Nac_box_NAC GEO-BACTERIAL BLIGHT,
82 Os06g0726100 Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
83 Os06g0726200 Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
 
 
           

Contact :

Prof. R. Sowdhamini

STIFDB TEAM :

Prof. R. Sowdhamini | Shameer Khader
Mahantesha Naika B. N. | Oommen K. M.

Last Updated :

15th Oct, 2012