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STIFDB - Stress Responsive Genes in Chromosome - 04 from Oryza sativa subsp japonica:

No. TAIR IDGenes DescriptionResponsive Transcription FactorStress Elements
1 Os04g0109500 The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
2 Os04g0116600 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
3 Os04g0119000 Unavailable ABRE_AB13_VP1 GEO-BACTERIAL BLIGHT,
4 Os04g0150300 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
5 Os04g0154800 Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles may be a single or double lipid bilayer also includes associated proteins. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
6 Os04g0172400 Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). ABRE_AB13_VP1 GEO-BACTERIAL BLIGHT,GEO-HEAT,
7 Os04g0173800 Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH ABRE_bZIP GEO-BACTERIAL BLIGHT,GEO-HEAT,
8 Os04g0178300 Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-IRON ,
9 Os04g0179200 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. DREB_AP2_EREBP OsIRO2_bHLH GEO-BACTERIAL BLIGHT,
10 Os04g0179700 Interacting selectively and non-covalently with magnesium (Mg) ions. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,GEO-HEAT,
11 Os04g0180400 Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,GEO-IRON ,
12 Os04g0188500 Unavailable DREB_AP2_EREBP GEO-DROUGHT,
13 Os04g0203400 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP GEO-DROUGHT,
14 Os04g0204100 Unavailable DREB_AP2_EREBP Nac_box_NAC GEO-COLD,
15 Os04g0223300 Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
16 Os04g0225100 Interacting selectively and non-covalently with any nucleic acid. DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
17 Os04g0234600 Unavailable ABRE_AB13_VP1 Nac_box_NAC OsIRO2_bHLH GEO-IRON ,
18 Os04g0271700 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP GEO-IRON ,
19 Os04g0304400 Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). ABRE_AB13_VP1 DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,
20 Os04g0319800 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-DROUGHT,
21 Os04g0322100 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
22 Os04g0339400 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,
23 Os04g0352400 Unavailable GEO-BACTERIAL BLIGHT,GEO-HEAT,
24 Os04g0354600 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. ABRE_AB13_VP1 GEO-HEAT,GEO-IRON ,
25 Os04g0366000 Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. ABRE_AB13_VP1 Nac_box_NAC OsIRO2_bHLH ABRE_bZIP GEO-BACTERIAL BLIGHT,
26 Os04g0373000 Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-DROUGHT,
27 Os04g0380300 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP PRE4_WRKY GEO-BACTERIAL BLIGHT,
28 Os04g0382900 Interacting selectively and non-covalently with ice, water reduced to the solid state by cold temperature. It is a white or transparent colorless substance, crystalline, brittle, and viscoidal. ABRE_AB13_VP1 DREB_AP2_EREBP PRE4_WRKY GEO-HEAT,
29 Os04g0385600 The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. ABRE_AB13_VP1 GEO-DROUGHT,
30 Os04g0395800 Unavailable DREB_AP2_EREBP GEO-HEAT,
31 Os04g0412700 Unavailable ABRE_AB13_VP1 GEO-HEAT,
32 Os04g0415800 Interacting selectively and non-covalently with a lipid. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-ABA,
33 Os04g0417000 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP OsIRO2_bHLH GEO-BACTERIAL BLIGHT,
34 Os04g0420900 Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. ABRE_AB13_VP1 Nac_box_NAC GEO-BACTERIAL BLIGHT,
35 Os04g0430200 Catalysis of the reaction: a phospholipid + H2O = 1,2-diacylglycerol + a phosphatidate. ABRE_AB13_VP1 Nac_box_NAC GEO-BACTERIAL BLIGHT,
36 Os04g0437000 Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). ABRE_AB13_VP1 DREB_AP2_EREBP GEO-ABA,
37 Os04g0442200 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH ABRE_bZIP GEO-BACTERIAL BLIGHT,
38 Os04g0444800 Interacting selectively and non-covalently with iron (Fe) ions. ABRE_AB13_VP1 DREB_AP2_EREBP OsIRO2_bHLH GEO-BACTERIAL BLIGHT,GEO-HEAT,
39 Os04g0445100 Unavailable ABRE_AB13_VP1 GEO-HEAT,
40 Os04g0445700 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
41 Os04g0450100 A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH GEO-BACTERIAL BLIGHT,
42 Os04g0450900 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC PRE2_WRKY GEO-HEAT,
43 Os04g0458900 Stops, prevents or reduces the activity of an enzyme. ABRE_AB13_VP1 OsIRO2_bHLH ABRE_bZIP GEO-BACTERIAL BLIGHT,
44 Os04g0460400 Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles may be a single or double lipid bilayer also includes associated proteins. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-DROUGHT,
45 Os04g0465300 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
46 Os04g0471700 Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). GEO-BACTERIAL BLIGHT,
47 Os04g0480900 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,
48 Os04g0481100 Unavailable ABRE_AB13_VP1 GEO-HEAT,
49 Os04g0481600 Modulation of the activity of the enzyme protein phosphatase type 2A. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-DROUGHT,
50 Os04g0492900 Interacting selectively and non-covalently with an RNA molecule or a portion thereof. DREB_AP2_EREBP Nac_box_NAC GEO-IRON ,
51 Os04g0493400 Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. ABRE_AB13_VP1 GEO-BACTERIAL BLIGHT,
52 Os04g0494100 Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC PRE4_WRKY GEO-BACTERIAL BLIGHT,
53 Os04g0494800 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
54 Os04g0506300 Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles may be a single or double lipid bilayer also includes associated proteins. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,
55 Os04g0509600 Unavailable DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,
56 Os04g0511200 A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC PRE4_WRKY GEO-IRON ,
57 Os04g0518600 Unavailable ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
58 Os04g0521100 Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,GEO-HEAT,
59 Os04g0524300 Responds to a two-component sensor to initiate a change in cell state or activity. The activity of the response regulator is regulated by transfer of a phosphate from a histidine residue in the sensor, to an aspartate residue in the response regulator. Many but not all response regulators act as transcriptional regulators to elicit a response. ABRE_AB13_VP1 DREB_AP2_EREBP ABRE_bZIP GEO-HEAT,
60 Os04g0538000 The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. ABRE_AB13_VP1 GEO-HEAT,
61 Os04g0543500 Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-DROUGHT,
62 Os04g0544200 Unavailable DREB_AP2_EREBP OsIRO2_bHLH GEO-DROUGHT,
63 Os04g0545600 Interacting selectively and non-covalently with copper (Cu) ions. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC PRE4_WRKY GEO-HEAT,
64 Os04g0560200 Unavailable ABRE_AB13_VP1 PRE4_WRKY GEO-ABA,
65 Os04g0568700 Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). DREB_AP2_EREBP G_box1_bZIP GEO-BACTERIAL BLIGHT,
66 Os04g0573000 The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-IRON ,
67 Os04g0578400 Interacting selectively and non-covalently with iron (Fe) ions. DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,GEO-HEAT,
68 Os04g0581000 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. ABRE_AB13_VP1 Nac_box_NAC GEO-BACTERIAL BLIGHT,
69 Os04g0581100 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,
70 Os04g0583200 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC PRE4_WRKY GEO-HEAT,
71 Os04g0583900 Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
72 Os04g0589200 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH GEO-IRON ,
73 Os04g0597600 Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
74 Os04g0600300 Interacting selectively and non-covalently with iron (Fe) ions. ABRE_AB13_VP1 DREB_AP2_EREBP PRE4_WRKY GEO-HEAT,
75 Os04g0604300 Catalysis of the hydrolysis of any O-glycosyl bond. ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
76 Os04g0604900 Catalysis of the hydrolysis of any O-glycosyl bond. ABRE_AB13_VP1 Nac_box_NAC GEO-BACTERIAL BLIGHT,GEO-IRON ,
77 Os04g0606000 Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
78 Os04g0608300 Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
79 Os04g0610400 Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). ABRE_AB13_VP1 DREB_AP2_EREBP GEO-DROUGHT,GEO-COLD,
80 Os04g0611200 Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). ABRE_AB13_VP1 DREB_AP2_EREBP PRE4_WRKY GEO-IRON ,
81 Os04g0613000 Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles may be a single or double lipid bilayer also includes associated proteins. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,
82 Os04g0615200 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
83 Os04g0618700 Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. GEO-BACTERIAL BLIGHT,
84 Os04g0635000 Unavailable ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
85 Os04g0645500 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
86 Os04g0649500 Unavailable ABRE_AB13_VP1 Nac_box_NAC GEO-HEAT,
87 Os04g0656800 Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. ABRE_AB13_VP1 Nac_box_NAC OsIRO2_bHLH GEO-HEAT,
88 Os04g0657600 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC OsIRO2_bHLH ABRE_bZIP GEO-HEAT,
89 Os04g0659100 Catalysis of the reaction: L-glutamate + ATP + NH(4)(+) = L-glutamine + ADP + 2 H(+) + phosphate. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-HEAT,
90 Os04g0659300 Combining with an extracellular or intracellular messenger to initiate a change in cell activity. ABRE_AB13_VP1 GEO-HEAT,
91 Os04g0659500 Interacting selectively and non-covalently with magnesium (Mg) ions. ABRE_AB13_VP1 Nac_box_NAC PRE4_WRKY GEO-BACTERIAL BLIGHT,GEO-HEAT,
92 Os04g0662200 Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-HEAT,
93 Os04g0662700 Catalysis of the reaction: GTP + H2O = formate + 2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)-dihydropteridine triphosphate + H+. ABRE_AB13_VP1 DREB_AP2_EREBP OsIRO2_bHLH ABRE_bZIP GEO-BACTERIAL BLIGHT,
94 Os04g0663300 Unavailable DREB_AP2_EREBP GEO-DROUGHT,
95 Os04g0664800 Catalysis of the hydrolysis of any O-glycosyl bond. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-ABA,GEO-DROUGHT,
96 Os04g0668800 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
97 Os04g0673700 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-IRON ,
98 Os04g0675400 Unavailable ABRE_AB13_VP1 DREB_AP2_EREBP Nac_box_NAC GEO-BACTERIAL BLIGHT,
99 Os04g0677600 Interacting selectively and non-covalently with ice, water reduced to the solid state by cold temperature. It is a white or transparent colorless substance, crystalline, brittle, and viscoidal. ABRE_AB13_VP1 DREB_AP2_EREBP GEO-DROUGHT,
100 Os04g0677800 Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. ABRE_AB13_VP1 GEO-BACTERIAL BLIGHT,
101 Os04g0679900 Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane. ABRE_AB13_VP1 Nac_box_NAC GEO-BACTERIAL BLIGHT,
102 Os04g0680800 Unavailable Nac_box_NAC GEO-HEAT,
103 Os04g0688600 Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. DREB_AP2_EREBP Nac_box_NAC ABRE_bZIP GEO-HEAT,
104 Os04g0690800 Unavailable ABRE_AB13_VP1 Nac_box_NAC GEO-BACTERIAL BLIGHT,
105 Os04g0691900 Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). ABRE_AB13_VP1 DREB_AP2_EREBP GEO-BACTERIAL BLIGHT,
 
 
           

Contact :

Prof. R. Sowdhamini

STIFDB TEAM :

Prof. R. Sowdhamini | Shameer Khader
Mahantesha Naika B. N. | Oommen K. M.

Last Updated :

15th Oct, 2012