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Retrovirus capsid protein, N-terminal core domain
Rv2632c-like
tRNA-intron endonuclease catalytic domain-like
Glutamyl tRNA-reductase catalytic, N-terminal domain
Class I glutamine amidotransferase-like
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
FMT C-terminal domain-like
CdCA1 repeat-like
FMN-dependent nitroreductase-like
Alpha-L RNA-binding motif
GlnB-like
FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
LigA subunit of an aromatic-ring-opening dioxygenase LigAB
XseB-like
LigT-like
Casein kinase II beta subunit
Ribosomal protein L14
YlxR-like
Cobalamin adenosyltransferase-like
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
Ribosomal protein L39e
Family A G protein-coupled receptor-like
CarD-like
t-snare proteins
L21p-like
POZ domain
Sec-C motif
PB2 C-terminal domain-like
Metallo-dependent hydrolases
Cadherin-like
SO1590-like
Sulfolobus fructose-1,6-bisphosphatase-like
CO dehydrogenase molybdoprotein N-domain-like
PrpR receptor domain-like
Atu1913-like
Vanabin-like
Homocysteine S-methyltransferase
Transmembrane di-heme cytochromes
Cysteine-rich DNA binding domain, (DM domain)
YNR034W-A-like
HMA, heavy metal-associated domain
LD-carboxypeptidase A C-terminal domain-like
Superantigen (mitogen) Ypm
Kelch motif
Galactose mutarotase-like
S-adenosylmethionine synthetase
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
Toll/Interleukin receptor TIR domain
PhtA domain-like
PK beta-barrel domain-like
beta-Roll
Invertebrate chitin-binding proteins
Antibiotic binding domain of TipA-like multidrug resistance regulators
Transcription factor IIA (TFIIA), beta-barrel domain
Hemerythrin-like
Head decoration protein D (gpD, major capsid protein D)
Insert subdomain of RNA polymerase alpha subunit
Anthrax protective antigen
PTSIIA/GutA-like
TrmB C-terminal domain-like
Formyltransferase
Major surface antigen p30, SAG1
Phage replication organizer domain
Actin-crosslinking proteins
FliG
Aspartate/glutamate racemase
L domain-like
ComB-like
Coronavirus NSP8-like
Amyloid beta a4 protein copper binding domain (domain 2)
Sporulation response regulatory protein Spo0B
FYVE/PHD zinc finger
Nucleic acid-binding proteins
TTHC002-like
Phospholipase A2, PLA2
E set domains
SMR domain-like
DNA methylase specificity domain
Periplasmic binding protein-like II
Bacterial photosystem II reaction centre, L and M subunits
Hypothetical protein TM1070
TFB5-like
DEK C-terminal domain
YceI-like
Trimeric LpxA-like enzymes
Pseudouridine synthase
Dimerisation domain of CENP-B
Oxygen-evolving enhancer protein 3,
6-phosphogluconate dehydrogenase C-terminal domain-like
Baseplate structural protein gp11
Amine oxidase N-terminal region
Sema domain
LmbE-like
delta-Endotoxin (insectocide), middle domain
Elafin-like
Tex N-terminal region-like
Thermostable phytase (3-phytase)
Methenyltetrahydrofolate cyclohydrolase-like
C-terminal autoproteolytic domain of nucleoporin nup98
2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Stathmin
Ricin B-like lectins
RbsD-like
TM1622-like
Head and neck region of the ectodomain of NDV fusion glycoprotein
Epsilon subunit of mitochondrial F1F0-ATP synthase
Immunoglobulin-binding domains
Periplasmic chaperone C-domain
HLH, helix-loop-helix DNA-binding domain
Elongation factor TFIIS domain 2
A heparin-binding domain
Heat-stable enterotoxin B
Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Type III secretion system domain
Malate synthase G
Staphylokinase/streptokinase
Heme-dependent catalase-like
UBA-like
Ubiquitin-like
Bet v1-like
C-terminal domain of Ku80
VPS9 domain
Penicillin-binding protein associated domain
FabD/lysophospholipase-like
Hypothetical protein YwqG
Chromosomal protein MC1
Aspartate/ornithine carbamoyltransferase
Viral glycoprotein ectodomain-like
Methylated DNA-protein cysteine methyltransferase domain
Tryptophan synthase beta subunit-like PLP-dependent enzymes
Ribosomal protein L13
Formate dehydrogenase/DMSO reductase, domains 1-3
Cobalamin (vitamin B12)-binding domain
Amine oxidase catalytic domain
MW0975(SA0943)-like
4'-phosphopantetheinyl transferase
YfmB-like
Midkine
Oxidoreductase molybdopterin-binding domain
Adhesin YadA, collagen-binding domain
Type II DNA topoisomerase
Peridinin-chlorophyll protein
Hsp90 co-chaperone CDC37
Carboxypeptidase inhibitor
Probable bacterial effector-binding domain
Shew3726-like
MG296-like
YqcC-like
CO dehydrogenase flavoprotein C-terminal domain-like
BH2638-like
1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
Hook domain
DOPA-like
Metalloproteases ("zincins"), catalytic domain
PTS system fructose IIA component-like
Phosphoglucomutase, C-terminal domain
GyrA/ParC C-terminal domain-like
QueA-like
Methyl-coenzyme M reductase subunits
Epsilon subunit of F1F0-ATP synthase C-terminal domain
Terpenoid cyclases/Protein prenyltransferases
Aldehyde ferredoxin oxidoreductase, C-terminal domains
Mannose 6-phosphate receptor domain
ssDNA-binding transcriptional regulator domain
Cell division protein MinE topological specificity domain
beta-catenin-interacting protein ICAT
Phosphoprotein M1, C-terminal domain
S-adenosylmethionine decarboxylase
CRISPR-associated protein
PA2201 C-terminal domain-like
BPTI-like
Api92-like
VP4 membrane interaction domain
YhbC-like, N-terminal domain
Telomeric repeat binding factor (TRF) dimerisation domain
Pentapeptide repeat-like
BAR/IMD domain-like
BSD domain-like
TerB-like
ALDH-like
Lipase chaperone-like
Trigger factor ribosome-binding domain
DLC
Invasin/intimin cell-adhesion fragments
CNF1/YfiH-like putative cysteine hydrolases
Transcription factor STAT-4 N-domain
N-terminal domain of adenylylcyclase associated protein, CAP
Translation initiation factor 2 beta, aIF2beta, N-terminal domain
DUSP-like
beta-Barrel protease inhibitors
OsmC-like
Antivirulence factor
Heme iron utilization protein-like
MTH889-like
Cytidine deaminase-like
HSP40/DnaJ peptide-binding domain
eIF-2-alpha, C-terminal domain
HemD-like
Clathrin adaptor appendage domain
RraA-like
Sigma3 and sigma4 domains of RNA polymerase sigma factors
Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
YggU-like
RuBisCO, large subunit, small (N-terminal) domain
HD-domain/PDEase-like
2-methylcitrate dehydratase PrpD
Ribosomal protein S2
NfeD domain-like
Lumazine synthase
Ribosomal protein S6
Ribosomal protein S7
YccV-like
YrdC/RibB
T4 endonuclease V
Doublecortin (DC)
CofD-like
Carbonic anhydrase
Flagellar hook protein flgE
Indigoidine synthase A-like
NAD kinase/diacylglycerol kinase-like
Photosystem I subunits PsaA/PsaB
Adenylylcyclase toxin (the edema factor)
Mollusk pheromone
Type II 3-dehydroquinate dehydratase
Nitrogenase accessory factor-like
Glutathione synthetase ATP-binding domain-like
RibA-like
YebC-like
GroEL-intermediate domain like
Plus3-like
NSP3A-like
Xylose isomerase-like
PriA/YqbF domain
RuvA domain 2-like
CoA-dependent acyltransferases
alpha-Amylase inhibitor tendamistat
Cytochrome c oxidase subunit II-like, transmembrane region
Rotavirus NSP2 fragment, C-terminal domain
DNA breaking-rejoining enzymes
Chorismate mutase II
Transcription factor NusA, N-terminal domain
Her-1
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Acyl-CoA dehydrogenase NM domain-like
Cytochrome b559 subunits
Rof/RNase P subunit-like
MoaD-related protein, C-terminal domain
FF domain
gp5 N-terminal domain-like
FimD N-terminal domain-like
FGAM synthase PurL, linker domain
Profilin (actin-binding protein)
DNA-binding C-terminal domain of the transcription factor MotA
Avirulence protein AvrPto
Bactericidal permeability-increasing protein, BPI
Ribosome binding protein Y (YfiA homologue)
VHP, Villin headpiece domain
Actin depolymerizing proteins
PLP-binding barrel
DNA polymerase III chi subunit
Subtilisin inhibitor
NRDP1 C-terminal domain-like
Homing endonucleases
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Hyaluronidase post-catalytic domain-like
Mob1/phocein
GCM domain
Pepsin inhibitor-3
YcfC-like
YkvR-like
EutN/CcmL-like
GAS2 domain-like
RecA protein, C-terminal domain
Insect pheromone/odorant-binding proteins
CofE-like
Cation efflux protein cytoplasmic domain-like
Nonstructural protein ns2, Nep, M1-binding domain
Ribbon-helix-helix
SAP domain
STI-like
Bromodomain
Isocitrate/Isopropylmalate dehydrogenase-like
Photosystem II reaction center protein L, PsbL
DNA polymerase III psi subunit
Ribosomal protein L16p/L10e
Diphtheria toxin, middle domain
E7 C-terminal domain-like
ATP synthase (F1-ATPase), gamma subunit
HIV integrase-binding domain
ICP-like
AF0104/ALDC/Ptd012-like
Tombusvirus P19 core protein, VP19
AhpD-like
Pyruvoyl-dependent histidine and arginine decarboxylases
Photosystem II reaction center protein K, PsbK
Plexin repeat
KorB DNA-binding domain-like
Sec63 N-terminal domain-like
Glycerol-3-phosphate (1)-acyltransferase
TTHA0583/YokD-like
BH3980-like
Fibre shaft of virus attachment proteins
39 kda initiator binding protein, IBP39, C-terminal domains
Colicin E immunity proteins
YopT-like
Tudor/PWWP/MBT
Tetracyclin repressor-like, C-terminal domain
Tricorn protease domain 2
Creatinase/aminopeptidase
MOSC N-terminal domain-like
Cryptochrome/photolyase, N-terminal domain
Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
TRADD, N-terminal domain
N-utilization substance G protein NusG, N-terminal domain
DNA-binding protein Tfx
Zinc finger domain of DNA polymerase-alpha
Ribosomal protein L36
Domain of early E2A DNA-binding protein, ADDBP
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
ApbE-like
Cryptochrome/photolyase FAD-binding domain
Cell division protein ZapA-like
Inosine monophosphate dehydrogenase (IMPDH)
TM1457-like
p53-like transcription factors
IVS-encoded protein-like
N-terminal, heterodimerisation domain of RBP7 (RpoE)
SAICAR synthase-like
Beta-D-glucan exohydrolase, C-terminal domain
NHL repeat
YdgH-like
Homodimeric domain of signal transducing histidine kinase
Bacterial ba3 type cytochrome c oxidase subunit IIa
CoA-transferase family III (CaiB/BaiF)
TrkA C-terminal domain-like
YgfB-like
Colicin
YozE-like
Cobalamin (vitamin B12)-dependent enzymes
Nicotinate/Quinolinate PRTase N-terminal domain-like
DinB/YfiT-like putative metalloenzymes
C-terminal domain of DFF45/ICAD (DFF-C domain)
Uracil-DNA glycosylase inhibitor protein
Cytochrome c oxidase subunit III-like
Kinase-associated protein B-like
Arp2/3 complex 21 kDa subunit ARPC3
Putative DNA-binding domain
CobE/GbiG C-terminal domain-like
Voltage-gated potassium channels
NAD-binding domain of HMG-CoA reductase
Dhaf3308-like
Acid proteases
Heat shock protein 70kD (HSP70), peptide-binding domain
GroEL equatorial domain-like
LCCL domain
Zn-binding domains of ADDBP
Bacterial enterotoxins
NIF3 (NGG1p interacting factor 3)-like
Protein prenylyltransferase
N-terminal domain of the delta subunit of the F1F0-ATP synthase
DPP6 N-terminal domain-like
ARID-like
MukF C-terminal domain-like
RAP domain-like
Cytochrome P450
Trefoil
Prenyltransferase-like
Nuclear receptor ligand-binding domain
DNA-binding domain of intron-encoded endonucleases
YqgQ-like
N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
Hypothetical protein ST1625
Gamma-glutamyl cyclotransferase-like
Ribonuclease PH domain 2-like
Glycosyl hydrolases family 6, cellulases
CheY-like
Superantigen toxins, C-terminal domain
Satiety factor CART (cocaine and amphetamine regulated transcript)
Dimeric alpha+beta barrel
CoaB-like
Cellulose-binding domain
Ectatomin subunits
FAD-dependent thiol oxidase
Nqo1 middle domain-like
Molybdenum cofactor biosynthesis proteins
Adsorption protein p2
DsrC, the gamma subunit of dissimilatory sulfite reductase
LuxS/MPP-like metallohydrolase
Viral protein domain
alpha-D-mannose-specific plant lectins
YugE-like
Coronavirus NSP7-like
Dystroglycan, domain 2
FHV B2 protein-like
RuBisCO, small subunit
CBS-domain pair
IpaD-like
Heme chaperone CcmE
FinO-like
Ribosomal protein S10
Ribosomal protein S16
DmpA/ArgJ-like
Putative transcriptional regulator TM1602, C-terminal domain
Ribosomal protein S19
Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor
Duffy binding domain-like
Tp47 lipoprotein, middle and C-terminal domains
AtpF-like
DsbC/DsbG N-terminal domain-like
Mitochondrial cytochrome c oxidase subunit VIa
Mitochondrial cytochrome c oxidase subunit VIc
CI-2 family of serine protease inhibitors
WGR domain-like
Somatomedin B domain
Transducin (alpha subunit), insertion domain
CalX-like
RPA2825-like
RNA polymerase subunits
Pyrimidine nucleoside phosphorylase C-terminal domain
Bacterial muramidases
GroEL apical domain-like
GlcG-like
Phosphohistidine domain
Enolase N-terminal domain-like
GroES-like
Ada DNA repair protein, N-terminal domain (N-Ada 10)
Viral leader polypeptide zinc finger
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
beta-beta-alpha zinc fingers
Eukaryotic type KH-domain (KH-domain type I)
ATP synthase D chain-like
Duplicated hybrid motif
HAND domain of the nucleosome remodeling ATPase ISWI
Lipocalins
TolB, N-terminal domain
TRAP-like
Hypothetical protein YjiA, C-terminal domain
PTPA-like
Hemocyanin, N-terminal domain
Ribosomal protein S18
Apolipoprotein
AMPKBI-like
MurCD N-terminal domain
F1F0 ATP synthase subunit A
F1F0 ATP synthase subunit C
ASF1-like
Nqo1C-terminal domain-like
Ribosomal protein L20
Ribosomal protein L22
Trimeric adhesin
IlvD/EDD N-terminal domain-like
Serine metabolism enzymes domain
EB1 dimerisation domain-like
Putative modulator of DNA gyrase, PmbA/TldD
DPY module
TRAF domain-like
Colicin E3 immunity protein
NSFL1 (p97 ATPase) cofactor p47, SEP domain
Subtilisin-like
MIT domain-like
Hypothetical protein SAV1430
IscX-like
HSP90 C-terminal domain
RGC domain-like
Cysteine proteinases
tRNA-binding arm
YbeD/HP0495-like
PSTPO5379-like
TmoB-like
Double-stranded DNA-binding domain
Thiamin pyrophosphokinase, catalytic domain
Methionine synthase activation domain-like
S13-like H2TH domain
R3H domain
Dodecin-like
GDNF receptor-like
TraM-like
MM3350-like
eEF-1beta-like
Citrate synthase
YcgL-like
Viral ssDNA binding protein
Pre-protein crosslinking domain of SecA
YqaI-like
BH3703-like
IHF-like DNA-binding proteins
Helical scaffold and wing domains of SecA
Microbial ribonucleases
YaeB-like
eEF1-gamma domain
PapD-like
Replisome organizer (g39p helicase loader/inhibitor protein)
DsrEFH-like
Sm-like ribonucleoproteins
BEACH domain
Glycolipid transfer protein, GLTP
PLC-like phosphodiesterases
ENV polyprotein, receptor-binding domain
Urease metallochaperone UreE, N-terminal domain
AF2212/PG0164-like
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
MFPT repeat-like
C-terminal domain of alpha and beta subunits of F1 ATP synthase
Nucleotide-binding domain
Caspase-like
Phase 1 flagellin
DNA polymerase beta, N-terminal domain-like
AbfB domain
Flagellar export chaperone FliS
Cyclophilin-like
TrpR-like
FAD-linked reductases, C-terminal domain
Pseudo ankyrin repeat-like
CAPPD, an extracellular domain of amyloid beta A4 protein
SpoVG-like
HBS1-like domain
Chromo domain-like
DTD-like
MurD-like peptide ligases, peptide-binding domain
Anti-sigma factor FlgM
RNA-binding domain, RBD
Immunoglobulin
Necrosis inducing protein 1, NIP1
Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
Efb C-domain-like
TTP0101/SSO1404-like
YdfO-like
ThiG-like
XCC0632-like
PheT/TilS domain
PriB N-terminal domain-like
Colicin D/E5 nuclease domain
Inhibitor of vertebrate lysozyme, Ivy
Extracellular hemoglobin linker subunit, receptor domain
Mannose-binding lectins
Hypothetical protein MTH538
Ribosomal protein S20
E6 C-terminal domain-like
GatB/YqeY motif
Hypothetical protein HI1480
KRAB domain (Kruppel-associated box)
Penicillin-binding protein 2x (pbp-2x), c-terminal domain
PABC (PABP) domain
Peptide methionine sulfoxide reductase
YejL-like
NE0471 N-terminal domain-like
Subunit PsaX of photosystem I reaction centre
Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Tubby C-terminal domain-like
ADC-like
Activating enzymes of the ubiquitin-like proteins
Soluble quinoprotein glucose dehydrogenase
Magnesium transport protein CorA, transmembrane region
RelB-like
DNA primase DnaG, C-terminal domain
Hypothetical protein VC0424
DNA repair protein MutS, domain III
beta-Galactosidase/glucuronidase domain
YfbU-like
Aminomethyltransferase beta-barrel domain
Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Fe-only hydrogenase
EAL domain-like
Monooxygenase (hydroxylase) regulatory protein
PRC-barrel domain
Hypothetical protein At3g22680
Allene oxide cyclase-like
Acetoacetate decarboxylase-like
Surface presentation of antigens (SPOA)
all-alpha NTP pyrophosphatases
PsbZ-like
Ta0600-like
Methenyltetrahydromethanopterin cyclohydrolase
PHP14-like
Second domain of FERM
Poly(A) polymerase catalytic subunit-like
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Cu,Zn superoxide dismutase-like
Protease propeptides/inhibitors
Peptidyl-tRNA hydrolase-like
Hypothetical protein PF0899
NEAT domain-like
Cytochrome c
HIN-2000 domain-like
Bcl-2 inhibitors of programmed cell death
Typo IV secretion system protein TraC
mu transposase, C-terminal domain
Fumarylacetoacetate hydrolase, FAH, N-terminal domain
Bromelain inhibitor VI (cysteine protease inhibitor)
gene 59 helicase assembly protein
Cell-division protein ZipA, C-terminal domain
Virulence-associated V antigen
AMMECR1-like
Oncogene products
PetN subunit of the cytochrome b6f complex
Photosystem II antenna protein-like
Rad51 N-terminal domain-like
Nuclease A inhibitor (NuiA)
HAD-like
RCC1/BLIP-II
YugN-like
Ribosomal protein L9 C-domain
HIT-like
GlpP-like
Dextranase, N-terminal domain
Helical domain of Sec23/24
Dipeptidyl peptidase I (cathepsin C), exclusion domain
Chemosensory protein Csp2
Translation proteins
eIF4e-like
Diol dehydratase, gamma subunit
Type I dockerin domain
CCCH zinc finger
Ganglioside M2 (gm2) activator
Hypothetical protein YojF
Chelatase
AF1862-like
GINS helical bundle-like
Hairpin loop containing domain-like
SNARE-like
Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
alpha/beta knot
VPS28 C-terminal domain-like
Seven-hairpin glycosidases
Superantigen MAM
NOB1 zinc finger-like
OMPT-like
Hypothetical protein AF0491, middle domain
Zinc hairpin stack
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Subunit IX of photosystem I reaction centre, PsaJ
RalF, C-terminal domain
PA domain
Translation initiation factor IF3, N-terminal domain
Bowman-Birk inhibitor, BBI
LanC-like
Rap30/74 interaction domains
Cyclotides
beta and beta-prime subunits of DNA dependent RNA-polymerase
AlbA-like
GntR ligand-binding domain-like
Siroheme synthase middle domains-like
IpsF-like
Prokaryotic lipoproteins and lipoprotein localization factors
Type III secretory system chaperone-like
Alpha-lytic protease prodomain
Hypothetical protein MTH777 (MT0777)
Viral DNA-binding domain
Aldehyde ferredoxin oxidoreductase, N-terminal domain
Phosphoglycerate kinase
Group I dsDNA viruses
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
TPR-like
Tubulin chaperone cofactor A
Ribonuclease H-like
Proton glutamate symport protein
Uracil-DNA glycosylase-like
Penicillin binding protein dimerisation domain
Interleukin 8-like chemokines
ApaG-like
Creatinase/prolidase N-terminal domain
DNA-binding protein LAG-1 (CSL)
MoeA C-terminal domain-like
Vitelline membrane outer protein-I (VMO-I)
Glutaminase/Asparaginase
Peptidyl-tRNA hydrolase II
Hypothetical protein MPN330
Translation proteins SH3-like domain
C-terminal UvrC-binding domain of UvrB
Nqo5-like
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
Topoisomerase V catalytic domain-like
Ctag/Cox11
BB1717-like
N-terminal domain of DnaB helicase
Mitochondrial cytochrome c oxidase subunit VIIa
Mitochondrial cytochrome c oxidase subunit VIIb
HlyD-like secretion proteins
Cag-Z
A virus capsid protein alpha-helical domain
I/LWEQ domain
GHMP Kinase, C-terminal domain
Granulin repeat
NMB0488-like
Dihydrofolate reductase-like
CRAL/TRIO N-terminal domain
Cellulose docking domain, dockering
HCP-like
SET domain
Outer arm dynein light chain 1
PG0775 C-terminal domain-like
NosL/MerB-like
Protein kinase-like (PK-like)
Bacillus phage protein
beta-lactamase/transpeptidase-like
DBL homology domain (DH-domain)
TMV-like viral coat proteins
Tachylectin-2
Subunit XII of photosystem I reaction centre, PsaM
Hypothetical protein MG354
DAK1/DegV-like
WWE domain
Domain of the SRP/SRP receptor G-proteins
(Trans)glycosidases
N-terminal domains of the minor coat protein g3p
Sec7 domain
Putative methyltransferase TM0872, insert domain
T-antigen specific domain-like
Sporulation inhibitor Sda
FlhC-like
Succinyl-CoA synthetase domains
SGNH hydrolase
PEBP-like
PG1388-like
AFP III-like domain
HIV-1 VPU cytoplasmic domain
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
HR1 repeat
C-terminal domain of ProRS
Pili subunits
TAZ domain
YbaK/ProRS associated domain
Rho N-terminal domain-like
Outer membrane phospholipase A (OMPLA)
Serum albumin-like
Ecotin, trypsin inhibitor
Fungal elicitin
Globin-like
Diaminopimelate epimerase-like
Anticodon-binding domain of PheRS
Leukocidin-like
Acyl-CoA N-acyltransferases (Nat)
Lipovitellin-phosvitin complex; beta-sheet shell regions
EV matrix protein
FAD-linked oxidoreductase
Ribosomal protein L32e
Mog1p/PsbP-like
Mago nashi protein
Proguanylin
Carboxypeptidase regulatory domain-like
Periplasmic binding protein-like I
PRTase-like
Proteinase A inhibitor IA3
Frizzled cysteine-rich domain
Ribulose-phoshate binding barrel
Mini-collagen I, C-terminal domain
Coproporphyrinogen III oxidase
SopE-like GEF domain
C-terminal domain of arginine repressor
Photosystem II reaction center protein J, PsbJ
Lamin A/C globular tail domain
PRP4-like
Virus attachment protein globular domain
FLJ32549 domain-like
Dipeptide transport protein
Hydrophobin II, HfbII
YefM-like
Rhodanese/Cell cycle control phosphatase
Thioredoxin-like
Ribosomal protein L25-like
Methionine synthase domain
Prokaryotic ribosomal protein L17
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Bacteriophage trimeric proteins domain
Nucleotidylyl transferase
Molybdenum cofactor-binding domain
Ribonuclease Rh-like
Multiheme cytochromes
VhTI-like
AXH domain
Putative isomerase YbhE
Cloacin translocation domain
dUTPase-like
Chaperone J-domain
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
Methylglyoxal synthase-like
Baseplate structural protein gp8
Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain
Amidase signature (AS) enzymes
Hypothetical protein Yml108w
YjbQ-like
HydB/Nqo4-like
AF2331-like
PsbU/PolX domain-like
Upper collar protein gp10 (connector protein)
Mitochondrial import receptor subunit Tom20
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
Iron-dependent repressor protein, dimerization domain
Replication terminator protein (Tus)
Hypothetical protein Ta0289 C-terminal domain
Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain
dsRNA-binding domain-like
PTS-regulatory domain, PRD
Core binding factor beta, CBF
Fucose-specific lectin
KA1-like
Epsilon subunit of F1F0-ATP synthase N-terminal domain
Cytochrome c oxidase subunit I-like
Actinoxanthin-like
TSP9-like
Nicotinate/Quinolinate PRTase C-terminal domain-like
DNA repair protein MutS, domain II
Histidine-containing phosphotransfer domain, HPT domain
D-aminopeptidase, middle and C-terminal domains
MgtE membrane domain-like
PCD-like
Serine protease inhibitors
SMAD/FHA domain
ClpS-like
Crustacean CHH/MIH/GIH neurohormone
Dcp2 domain-like
Surp module (SWAP domain)
Band 7/SPFH domain
Zn-finger domain of Sec23/24
Reovirus inner layer core protein p3
Jann4075-like
4Fe-4S ferredoxins
Fe-S cluster assembly (FSCA) domain-like
Serpins
B-form DNA mimic Ocr
BAG domain
MAST3 pre-PK domain-like
Roadblock/LC7 domain
RL5-like
PurS-like
Barstar-related
Restriction endonuclease-like
Hypothetical protein MTH393
Clavaminate synthase-like
Ribose/Galactose isomerase RpiB/AlsB
H-NS histone-like proteins
TM0957-like
NADH pyrophosphatase intervening domain
Thioesterase/thiol ester dehydrase-isomerase
Cholecystokinin A receptor, N-domain
"Winged helix" DNA-binding domain
ADC synthase
LDL receptor-like module
DNA helicase RuvA subunit, C-terminal domain
BLRF2-like
Metallothionein
Glycosyl hydrolase domain
MtlR-like
RNase III domain-like
Calcium ATPase, transmembrane domain M
X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain
BAS1536-like
VHL
Bacillus cereus metalloprotein-like
CheY-binding domain of CheA
Class II aaRS ABD-related
Glycoside hydrolase/deacetylase
YWTD domain
GspK insert domain-like
PF0523-like
SP0830-like
'SARS ORF9b-like
YggX-like
BT0923-like
PP2C-like
Acetyl-CoA synthetase-like
TTHA1528-like
Molybdenum cofactor biosynthesis protein C, MoaC
DhaL-like
Kazal-type serine protease inhibitors
Anaphylotoxins (complement system)
Conserved core of transcriptional regulatory protein vp16
EPT/RTPC-like
SARS Nsp1-like
MOP-like
WD40 repeat-like
Leukotriene A4 hydrolase N-terminal domain
S-adenosyl-L-methionine-dependent methyltransferases
PPK N-terminal domain-like
Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Defensin-like
ATP synthase B chain-like
ATP12-like
PH1570-like
Fe,Mn superoxide dismutase (SOD), N-terminal domain
RNA 3'-terminal phosphate cyclase, RPTC, insert domain
YcfA/nrd intein domain
Nucleotidyltransferase
Nucleotide cyclase
L-sulfolactate dehydrogenase-like
Nucleocapsid protein dimerization domain
Hedgehog/intein (Hint) domain
Bacterial fluorinating enzyme, C-terminal domain
ISP transmembrane anchor
Smr-associated domain-like
PUA domain-like
SBT domain
Riboflavin kinase-like
Gametocyte protein Pfg27
C-terminal effector domain of the bipartite response regulators
Nitrile hydratase alpha chain
DNA damage-inducible protein DinI
Spectrin repeat
Nicotinic receptor ligand binding domain-like
YwmB-like
Suppressor of Fused, N-terminal domain
Ribokinase-like
AttH-like
ISY1 domain-like
N-terminal domain of bifunctional PutA protein
ERO1-like
Ribosomal protein L31e
Precorrin-8X methylmutase CbiC/CobH
Plakin repeat
Flavoproteins
FomD-like
Ribosome recycling factor, RRF
SEA domain
Non-globular alpha+beta subunits of globular proteins
YkuJ-like
Protozoan pheromone proteins
Gated mechanosensitive channel
F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
Aquaporin-like
Head-to-tail joining protein W, gpW
Plant lectins/antimicrobial peptides
Carbohydrate binding domain
Cgl1923-like
Mitochondrial glycoprotein MAM33-like
Enolase C-terminal domain-like
Ribosomal protein L6
Ribosomal protein L1
ENTH/VHS domain
Phosphofructokinase
Nqo1 FMN-binding domain-like
RPB5-like RNA polymerase subunit
Replicase NSP9
Folate-binding domain
Quinohemoprotein amine dehydrogenase C chain
Alpha subunit of glutamate synthase, C-terminal domain
TolB, C-terminal domain
Aminoacid dehydrogenase-like, N-terminal domain
PYP-like sensor domain (PAS domain)
Double Clp-N motif
Ankyrin repeat
YbaB-like
SRCR-like
Allophycocyanin linker chain (domain)
TATA-box binding protein-like
Rbstp2229 protein
Outer surface protein C (OspC)
Endosomal sorting complex assembly domain
B-box zinc-binding domain
Enzyme IIa from lactose specific PTS, IIa-lac
delta-Endotoxin (insectocide), N-terminal domain
Cyanovirin-N
L27 domain
VC0467-like
Flavivirus capsid protein C
Scorpion toxin-like
TNF-like
DNA-binding domain of EIN3-like
DHS-like NAD/FAD-binding domain
Myosin phosphatase inhibitor 17kDa protein, CPI-17
Cell growth inhibitor/plasmid maintenance toxic component
YeeU-like
PA1994-like
Carbamate kinase-like
CorA soluble domain-like
RNA-binding protein She2p
Rap/Ran-GAP
(2r)-phospho-3-sulfolactate synthase ComA
GTP cyclohydrolase I feedback regulatory protein, GFRP
Bacterial immunoglobulin/albumin-binding domains
Ta1353-like
HMG-box
Transposase IS200-like
Cysteine alpha-hairpin motif
Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SMI1/KNR4-like
Inhibitor of apoptosis (IAP) repeat
TGS-like
Ava3019-like
SH3-domain
TB module/8-cys domain
MFS general substrate transporter
Fibronectin type III
p53 tetramerization domain
4-helical cytokines
SP0561-like
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
Flagellar transcriptional activator FlhD
Smp-1-like
NusB-like
RNI-like
NifT/FixU-like
Glucocorticoid receptor-like (DNA-binding domain)
E2F-DP heterodimerization region
Zn2/Cys6 DNA-binding domain
Cloroperoxidase
At5g01610-like
Lipoxigenase
Carbamoyl phosphate synthetase, small subunit N-terminal domain
Actin-like ATPase domain
omega toxin-like
Acetamidase/Formamidase-like
Retroviral matrix proteins
Phenylalanine zipper
Hemopexin-like domain
Quinohemoprotein amine dehydrogenase A chain, domain 3
Gurmarin-like
Dehydroquinate synthase-like
alpha-catenin/vinculin-like
Rps17e-like
Cytokine
Ns1 effector domain-like
Neurotransmitter-gated ion-channel transmembrane pore
Methanol dehydrogenase subunit
Satellite viruses
Bacteriocin AS-48
Protein HNS-dependent expression A; HdeA
P40 nucleoprotein
D-ribose-5-phosphate isomerase (RpiA), lid domain
MTH938-like
Membrane penetration protein mu1
Viral chemokine binding protein m3
Expressed protein At2g23090/F21P24.15
lambda repressor-like DNA-binding domains
YehU-like
Hermes dimerisation domain
SO2669-like
Cell wall binding repeat
DNA-binding pseudobarrel domain
HP1531-like
Starch-binding domain-like
Hypothetical protein YhaI
Beta-galactosidase LacA, domain 3
Ribonuclease domain of colicin E3
beta-lactamase-inhibitor protein, BLIP
Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
ERH-like
Carbohydrate phosphatase
HybD-like
AF1531-like
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
DNase I-like
ATP-dependent DNA ligase DNA-binding domain
Agglutinin HPA-like
DNA ligase/mRNA capping enzyme, catalytic domain
ENT-like
Cdc48 domain 2-like
TorD-like
Ribosome-binding factor A, RbfA
Subunit VIII of photosystem I reaction centre, PsaI
Hemolytic lectin CEL-III, C-terminal domain
PX domain
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
PAZ domain
Methane monooxygenase hydrolase, gamma subunit
Agglutinin
Hypothetical protein MTH1880
PA2201 N-terminal domain-like
TIMP-like
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
Ribosomal protein L30p/L7e
Glutamyl tRNA-reductase dimerization domain
Arp2/3 complex 16 kDa subunit ARPC5
FnI-like domain
D-aminoacid aminotransferase-like PLP-dependent enzymes
RNase A-like
Ypt/Rab-GAP domain of gyp1p
Subunits of heterodimeric actin filament capping protein Capz
Pentein
Small protein B (SmpB)
TTHA0068-like
Taf5 N-terminal domain-like
SARS receptor-binding domain-like
Arp2/3 complex subunits
Transglutaminase, two C-terminal domains
Domain from hypothetical 2610208m17rik protein
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
GAT-like domain
GatD N-terminal domain-like
Carbohydrate-binding domain
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Kringle-like
FlaG-like
Killer toxin KP6 alpha-subunit
Small-conductance potassium channel
AraD/HMP-PK domain-like
Ribosomal protein L19 (L19e)
NTF2-like
BTG domain-like
Cna protein B-type domain
MesJ substrate recognition domain-like
Plant proteinase inhibitors
Eukaryotic RPB5 N-terminal domain
Prion-like
YmcC-like
ParB/Sulfiredoxin
Neurotoxin III (ATX III)
DnaD domain-like
F-box domain
SipA N-terminal domain-like
Alkaline phosphatase-like
Protein-L-isoaspartyl O-methyltransferase, C-terminal domain
FKBP-like
DNA polymerase III theta subunit-like
HSP20-like chaperones
Staphylocoagulase
Variable surface antigen VlsE
Ornithine decarboxylase C-terminal domain
Sensory domain-like
Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
XPC-binding domain
MalF N-terminal region-like
FAT domain of focal adhesion kinase
MHC antigen-recognition domain
EspA/CesA-like
Hypothetical protein TM0160
YutG-like
Nop domain
Galactose oxidase, central domain
Vng1086c-like
Hypothetical protein YjbJ
YidB-like
SspB-like
Sporulation related repeat
RplX-like
YueI-like
vWA-like
DR1885-like metal-binding protein
Multidrug resistance efflux transporter EmrE
Translational regulator protein regA
Photosystem II 10 kDa phosphoprotein PsbH
Chorismate lyase-like
YnzC-like
Elongation factor Ts (EF-Ts), dimerisation domain
Hypothetical protein MTH1184
Aspartate receptor, ligand-binding domain
Calponin-homology domain, CH-domain
Ribosomal protein S8
Phosphoglycerate mutase-like
HisI-like
Peptidylarginine deiminase Pad4, middle domain
Heat shock protein 70kD (HSP70), C-terminal subdomain
TNF receptor-like
Thiamin diphosphate-binding fold (THDP-binding)
GRIP domain
Obg GTP-binding protein C-terminal domain
WW domain
Annexin
L,D-transpeptidase catalytic domain-like
Exotoxin A, middle domain
AF1782-like
Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Eukaryotic DNA topoisomerase I, dispensable insert domain
Anti-sigma factor AsiA
PHP domain-like
SAND domain-like
YacF-like
Herpes virus serine proteinase, assemblin
UDP-Glycosyltransferase/glycogen phosphorylase
Chitinase insertion domain
Transferrin receptor-like dimerisation domain
Fe-only hydrogenase smaller subunit
C-terminal domain of mollusc hemocyanin
A middle domain of Talin 1
AF1104-like
Regulator of G-protein signaling, RGS
CO dehydrogenase ISP C-domain like
Recombination endonuclease VII, C-terminal and dimerization domains
NinB
Purine and uridine phosphorylases
MIR domain
Functional domain of the splicing factor Prp18
eIF1-like
3-carboxy-cis,cis-mucoante lactonizing enzyme
Protein serine/threonine phosphatase 2C, C-terminal domain
HI0933 insert domain-like
His-Me finger endonucleases
A DNA-binding domain in eukaryotic transcription factors
Barrier-to-autointegration factor, BAF
MxiH-like
Zn-binding ribosomal proteins
Argininosuccinate synthetase, C-terminal domain
Alpha-2,3/8-sialyltransferase CstII
Hypothetical protein Ta1206
Oligosaccharyltransferase subunit ost4p
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
GST C-terminal domain-like
Smc hinge domain
Hcp1-like
L,D-transpeptidase pre-catalytic domain-like
PE/PPE dimer-like
Indolic compounds 2,3-dioxygenase-like
Quinoprotein alcohol dehydrogenase-like
Aldolase
gp9
Preprotein translocase SecE subunit
CPE0013-like
Regulatory protein AraC
Signal recognition particle alu RNA binding heterodimer, SRP9/14
Transducin (heterotrimeric G protein), gamma chain
PIN domain-like
Barwin-like endoglucanases
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
TAF(II)230 TBP-binding fragment
S15/NS1 RNA-binding domain
Aminopeptidase/glucanase lid domain
N-acetylmuramoyl-L-alanine amidase-like
Phoshotransferase/anion transport protein
Metallo-dependent phosphatases
ADP-ribosylglycohydrolase
N-terminal domain of MutM-like DNA repair proteins
Outer membrane efflux proteins (OEP)
Phosphoprotein oligomerization domain-like
FMN-binding split barrel
C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
SpoIIaa-like
FwdE-like
PTS IIb component
Monomethylamine methyltransferase MtmB
Ribosomal protein S3 C-terminal domain
Cytochrome b5-like heme/steroid binding domain
Nucleoside diphosphate kinase, NDK
ClpP/crotonase
ThrRS/AlaRS common domain
Electron transport accessory proteins
HPr-like
TolA/TonB C-terminal domain
DNA-binding domain of Mlu1-box binding protein MBP1
UbiD C-terminal domain-like
ITPase-like
Nuclear receptor coactivator interlocking domain
Tricorn protease N-terminal domain
tRNA-intron endonuclease N-terminal domain-like
Thiamin pyrophosphokinase, substrate-binding domain
Metal cation-transporting ATPase, ATP-binding domain N
Calpain large subunit, middle domain (domain III)
MTH1598-like
Antigen MPT63/MPB63 (immunoprotective extracellular protein)
Six-hairpin glycosidases
Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
Hypothetical protein YgiW
TM0693-like
NblA-like
Staphylococcal nuclease
SSO1389-like
CYTH-like phosphatases
PA1123-like
CBD9-like
alpha/beta-Hydrolases
SCP-like
Photosystem II reaction center protein I, PsbI
"Helical backbone" metal receptor
CytB endotoxin-like
Recombination protein RecR
Probable ACP-binding domain of malonyl-CoA ACP transacylase
Lysozyme-like
Thermophilic metalloprotease-like
Pyridoxine 5'-phosphate synthase
HP0062-like
Microbial and mitochondrial ADK, insert "zinc finger" domain
Superoxide reductase-like
14-3-3 protein
AGR C 984p-like
PhnH-like
gamma-Crystallin-like
Kinetochore globular domain
Aconitase B, N-terminal domain
Clathrin heavy-chain terminal domain
Uteroglobin-like
Transthyretin (synonym: prealbumin)
JAB1/MPN domain
Porins
Peptidase/esterase 'gauge' domain
DNA-glycosylase
Molybdopterin synthase subunit MoaE
Nudix
Hypothetical protein PA1324
Lp2179-like
Cytochrome c oxidase subunit E
CutC-like
Myosin S1 fragment, N-terminal domain
Subdomain of clathrin and coatomer appendage domain
FAD-binding/transporter-associated domain-like
DNA-binding domain
YhbY-like
N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Nop10-like SnoRNP
Cytochrome c oxidase subunit h
AF0625-like
TM1646-like
Aerolisin/ETX pore-forming domain
Histone-fold
Composite domain of metallo-dependent hydrolases
SAM/Pointed domain
Prismane protein-like
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Putative dsDNA mimic
FumA C-terminal domain-like
Tlp20, baculovirus telokin-like protein
Hypothetical protein YqbG
Fungal immunomodulatory protein, FIP
Nitrite/Sulfite reductase N-terminal domain-like
ssDNA viruses
Polo-box domain
YopX-like
Amb V allergen
YegP-like
Heme-binding protein A (HasA)
ISP domain
Oxysterol-binding protein-like
CbiG N-terminal domain-like
Pheromone ER-23
EsxAB dimer-like
PurM N-terminal domain-like
Thyroglobulin type-1 domain
WSSV envelope protein-like
Apolipophorin-III
Hsp33 domain
CAC2185-like
Receptor-binding domain of short tail fibre protein gp12
N-utilization substance G protein NusG, insert domain
Regulatory factor Nef
FAH
AF0941-like
LemA-like
Docking domain A of the erythromycin polyketide synthase (DEBS)
Notch domain
alpha-helical ferredoxin
Mechanosensitive channel protein MscS (YggB), transmembrane region
Orange domain-like
Chalcone isomerase
Terpenoid synthases
N-terminal domain of cbl (N-cbl)
EGF/Laminin
KaiA/RbsU domain
Collagen-binding domain
ArfGap/RecO-like zinc finger
Photosystem I reaction center subunit X, PsaK
Peptide deformylase
Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
gp120 core
Group II dsDNA viruses VP
Guanido kinase N-terminal domain
EF-hand
Tetraspanin
EF2947-like
Avidin/streptavidin
PreATP-grasp domain
BRCA2 helical domain
Translation initiation factor IF3, C-terminal domain
C-terminal, gelsolin-like domain of Sec23/24
Lipovitellin-phosvitin complex, superhelical domain
Mediator hinge subcomplex-like
PHM/PNGase F
D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
Concanavalin A-like lectins/glucanases
Activator of Hsp90 ATPase, Aha1
Rubredoxin-like
Heme oxygenase-like
Putative cyclase
Apical membrane antigen 1
PAP/Archaeal CCA-adding enzyme, C-terminal domain
Methylesterase CheB, C-terminal domain
PhoU-like
FucI/AraA C-terminal domain-like
YajQ-like
PMT central region-like
Hypothetical protein c14orf129, hspc210
WRKY DNA-binding domain
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
Pollen allergen ole e 6
Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Creatininase
SMAD MH1 domain
YvfG-like
Oligoxyloglucan reducing end-specific cellobiohydrolase
Alpha-hemoglobin stabilizing protein AHSP
Photosystem II reaction center protein T, PsbT
Transcription factor IIA (TFIIA), alpha-helical domain
Jann2411-like
Cysteine-rich domain
SRP19
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
Crambin-like
Ribosomal protein L10-like
L30e-like
MAL13P1.257-like
MAPEG domain-like
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
C-type lectin-like
Cytolysin/lectin
Di-copper centre-containing domain
UraD-Like
LysM domain
Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
Lipase/lipooxygenase domain (PLAT/LH2 domain)
Poly A polymerase C-terminal region-like
Cation efflux protein transmembrane domain-like
Purple acid phosphatase, N-terminal domain
CinA-like
P-loop containing nucleoside triphosphate hydrolases
2Fe-2S ferredoxin-like
Major capsid protein VP5
Nucleoplasmin-like core domain
PK C-terminal domain-like
Rotavirus NSP2 fragment, N-terminal domain
LEM domain
Dom34/Pelota N-terminal domain-like
HesB-like domain
Hemolysin expression modulating protein HHA
Undecaprenyl diphosphate synthase
Riboflavin synthase domain-like
GIY-YIG endonuclease
Neurophysin II
Neurotoxin B-IV
MoeA N-terminal region -like
YVTN repeat-like/Quinoprotein amine dehydrogenase
Plasmid maintenance system epsilon/zeta, antidote epsilon subunit
AbrB/MazE/MraZ-like
SPy1572-like
Translin
Rhabdovirus nucleoprotein-like
PUG domain-like
MIT domain
Rudiment single hybrid motif
beta-carbonic anhydrase, cab
RPB6/omega subunit-like
Trm112p-like
Mitochondrial cytochrome c oxidase subunit IV
HprK N-terminal domain-like
USP8 N-terminal domain-like
RBP11-like subunits of RNA polymerase
DNA repair protein MutS, domain I
Isochorismatase-like hydrolases
Type X cellulose binding domain, CBDX
SecB-like
Hypothetical protein YfhH
AN1-like Zinc finger
Alpha-macroglobulin receptor domain
P-domain of calnexin/calreticulin
V-type ATPase subunit E-like
V-type ATP synthase subunit C
BolA-like
FucI/AraA N-terminal and middle domains
Smac/diablo
FlgN-like
RuBisCo LSMT C-terminal, substrate-binding domain
Hormone receptor domain
GTPase activation domain, GAP
YbjQ-like
Adenine nucleotide alpha hydrolases-like
NSP3 homodimer
Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Nickel-containing superoxide dismutase, NiSOD
General secretion pathway protein M, EpsM
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
EscU C-terminal domain-like
ACT-like
Cap-Gly domain
Glycerate kinase I
Resolvase-like
YheA/YmcA-like
Phage tail protein-like
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
GLA-domain
Sialidases
lambda integrase-like, N-terminal domain
GckA/TtuD-like
Zinc beta-ribbon
PEP carboxykinase N-terminal domain
Initiation factor IF2/eIF5b, domain 3
SOCS box-like
MoaD/ThiS
NagB/RpiA/CoA transferase-like
Docking domain B of the erythromycin polyketide synthase (DEBS)
SSo0622-like
Signal peptide-binding domain
Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
An insect antifreeze protein
OMPA-like
NAP-like
Soluble secreted chemokine inhibitor, VCCI
Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
Saposin
Insect cysteine-rich antifreeze protein
Colipase-like
Bacterial luciferase-like
Bacteriocin immunity protein-like
Retrovirus capsid dimerization domain-like
TK C-terminal domain-like
Ribosomal protein L4
Tp47 lipoprotein, N-terminal domain
Snake toxin-like
Phosphoglucomutase, first 3 domains
Scaffolding protein gpD of bacteriophage procapsid
Light-harvesting complex subunits
Ligand-binding domain in the NO signalling and Golgi transport
GUN4-like
SRF-like
MurD-like peptide ligases, catalytic domain
Complement control module/SCR domain
C-terminal domain of B transposition protein
5' to 3' exonuclease, C-terminal subdomain
Family 10 polysaccharide lyase
post-AAA+ oligomerization domain-like
Crisp domain-like
YopH tyrosine phosphatase N-terminal domain
Hypothetical membrane protein Ta0354, soluble domain
Mitochondrial ATP synthase coupling factor 6
DNA/RNA polymerases
RbcX-like
N-terminal domain of alpha and beta subunits of F1 ATP synthase
Baculovirus p35 protein
Rnp2-like
Nitric oxide (NO) synthase oxygenase domain
Swiveling domain of dehydratase reactivase alpha subunit
CsrA-like
YAP1 redox domain
Growth factor receptor domain
SNF-like
HSP33 redox switch-like
PKD domain
Metallo-hydrolase/oxidoreductase
Retrovirus zinc finger-like domains
Families 57/38 glycoside transferase middle domain
RNA polymerase subunit RPB10
MTH1187/YkoF-like
TAFH domain-like
Cell-division inhibitor MinC, C-terminal domain
XkdW-like
Phosphoprotein XD domain
mRNA decapping enzyme DcpS N-terminal domain
PurM C-terminal domain-like
PH0987 N-terminal domain-like
Coronavirus RNA-binding domain
Nitrous oxide reductase, N-terminal domain
Heme-dependent peroxidases
PetG subunit of the cytochrome b6f complex
Probable GTPase Der, C-terminal domain
Hect, E3 ligase catalytic domain
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Bacterial fluorinating enzyme, N-terminal domain
Thiolase-like
Calcium-dependent phosphotriesterase
Cupredoxins
MCP/YpsA-like
gpW/gp25-like
YhbC-like, C-terminal domain
tRNA-guanine transglycosylase
The spindle assembly checkpoint protein mad2
CheW-like
LEA14-like
YppE-like
GAF domain-like
Tim10-like
PFL-like glycyl radical enzymes
GFP-like
Ribosomal L27 protein-like
Copper amine oxidase, domain N
Mitochondrial carrier
Phage fibre proteins
Proteasome activator
Mechanosensitive channel protein MscS (YggB), C-terminal domain
NMB0513-like
RmlC-like cupins
OmpH-like
PWI domain
Alanine racemase C-terminal domain-like
BH3618-like
EndoU-like
FLJ32549 C-terminal domain-like
Acylphosphatase/BLUF domain-like
Sortase
SurE-like
Nitrite and sulphite reductase 4Fe-4S domain-like
RING/U-box
Tautomerase/MIF
Ribosomal protein L11, C-terminal domain
Thymidylate synthase-complementing protein Thy1
Integrin domains
YjgF-like
Chondroitin AC/alginate lyase
Acyl-CoA binding protein
Subunit III of photosystem I reaction centre, PsaF
Head-binding domain of phage P22 tailspike protein
beta-N-acetylhexosaminidase-like domain
Cyclin-like
Single hybrid motif
C-terminal domain of transcriptional repressors
CHY zinc finger-like
ABC transporter transmembrane region
Prefoldin
Ammonium transporter
PilZ domain-like
SIS domain
Thiamin phosphate synthase
L35p-like
Cystatin/monellin
BRK domain-like
Mss4-like
DNA clamp
L9 N-domain-like
TSP-1 type 1 repeat
Macro domain-like
Translational machinery components
PAH2 domain
BRCA2 tower domain
MbtH-like
L28p-like
NAD(P)-binding Rossmann-fold domains
Glucose permease domain IIB
Phosphoenolpyruvate/pyruvate domain
Urease, beta-subunit
Agouti-related protein
DHH phosphoesterases
PG1857-like
YorP-like
Hypothetical protein YoaG
Connexin43
STAT
Outer capsid protein sigma 3
Perfringolysin
TT1751-like
ARM repeat
Zn-dependent exopeptidases
Heparin-binding domain from vascular endothelial growth factor
Calcium ATPase, transduction domain A
SirA-like
EspE N-terminal domain-like
Prim-pol domain
Sigma2 domain of RNA polymerase sigma factors
Peptidyl-tRNA hydrolase domain-like
CRAL/TRIO domain
DnaK suppressor protein DksA, alpha-hairpin domain
Tetrahydrobiopterin biosynthesis enzymes-like
Nucleotidyltransferase substrate binding subunit/domain
LexA/Signal peptidase
FYSH domain
Sama2622-like
YoaC-like
Ribosomal proteins S24e, L23 and L15e
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
BRCT domain
GAD domain-like
PHL pollen allergen
CV3147-like
Carbon-nitrogen hydrolase
PTS system IIB component-like
ERP29 C domain-like
UROD/MetE-like
Soluble domain of poliovirus core protein 3a
HIT/MYND zinc finger-like
ChaB-like
SinR repressor dimerisation domain-like
Triger factor/SurA peptide-binding domain-like
PH0156-like
Formate/glycerate dehydrogenase catalytic domain-like
Integrin beta tail domain
ImmE5-like
HRDC-like
YjbR-like
SacY-like RNA-binding domain
Putative glucosidase YicI, C-terminal domain
Aconitase iron-sulfur domain
C-terminal domain of adenylylcyclase associated protein
Replication modulator SeqA, C-terminal DNA-binding domain
TSP type-3 repeat
V-region of surface antigen I/II (SA I/II, PAC)
GYF domain
SMc04008-like
Nucleoporin domain
PH domain-like
Cyanase C-terminal domain
Obg GTP-binding protein N-terminal domain
BC4932-like
cAMP-binding domain-like
Htr2 transmembrane domain-like
YgfY-like
Ribosome inactivating proteins (RIP)
An anticodon-binding domain of class I aminoacyl-tRNA synthetases
Fic-like
Prokaryotic type I DNA topoisomerase
Prokaryotic SH3-related domain
Cytochromes
Fumarate reductase respiratory complex transmembrane subunits
Multidrug efflux transporter AcrB transmembrane domain
Coronavirus NSP10-like
Methionyl-tRNA synthetase (MetRS), Zn-domain
YfgJ-like
TM1631-like
Toprim domain
Hedgehog/DD-peptidase
Calcium-mediated lectin
NAC domain
Glutamine synthetase/guanido kinase
Fibrinogen C-terminal domain-like
Urease, gamma-subunit
Methylamine dehydrogenase, L chain
Plant inhibitors of proteinases and amylases
FAD/NAD(P)-binding domain
Tubulin nucleotide-binding domain-like
GTF2I-like repeat
Glu-tRNAGln amidotransferase C subunit
Dimerization cofactor of HNF-1 alpha
LigB-like
MK0786-like
Yeast killer toxins
PetM subunit of the cytochrome b6f complex
Ferritin-like
Ferredoxin reductase-like, C-terminal NADP-linked domain
Substrate-binding domain of HMG-CoA reductase
Ribosomal proteins L15p and L18e
DNA-binding domain of retroviral integrase
ImpE-like
Rhomboid-like
Rv1873-like
DeoB insert domain-like
FdhE-like
Photosystem I subunit PsaD
Orange carotenoid protein, N-terminal domain
Acid phosphatase/Vanadium-dependent haloperoxidase
Cytochrome f, large domain
ACP-like
SufE/NifU
Transcriptional repressor TraM
L-A virus major coat protein
Acyl-CoA dehydrogenase C-terminal domain-like
Hypothetical protein TM0875
PLP-dependent transferases
Glycogen synthesis protein GlgS
beta-sandwich domain of Sec23/24
Moesin tail domain
Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Bacterial polysaccharide co-polymerase-like
Rabenosyn-5 Rab-binding domain-like
CbiD-like
MetI-like
IP3 receptor type 1 binding core, domain 2
Class II MHC-associated invariant chain ectoplasmic trimerization domain
Cullin repeat-like
PG0816-like
Lag-3 N-terminal region
alpha-ketoacid dehydrogenase kinase, N-terminal domain
ORC1-binding domain
Clc chloride channel
Leech antihemostatic proteins
Frataxin/Nqo15-like
Zinc-binding domain of translation initiation factor 2 beta
Colicin D immunity protein
Cell cycle regulatory proteins
Viral glycoprotein, central and dimerisation domains
DNA topoisomerase IV, alpha subunit
Bcr-Abl oncoprotein oligomerization domain
DNA terminal protein
YktB/PF0168-like
Bubble protein
N-(deoxy)ribosyltransferase-like
YbiA-like
NE1680-like
Pre-PUA domain
Diphtheria toxin, C-terminal domain
BB2672-like
Nucleoside hydrolase
Group V grass pollen allergen
PAP/OAS1 substrate-binding domain
CAD & PB1 domains
Integrin alpha N-terminal domain
Bacterial exopeptidase dimerisation domain
Apyrase
eIF2alpha middle domain-like
Accessory protein X4 (ORF8, ORF7a)
Carbamoyl phosphate synthetase, large subunit connection domain
RNA bacteriophage capsid protein
Tsx-like channel
Cystine-knot cytokines
PSPTO4464-like
Positive stranded ssRNA viruses
Class II aaRS and biotin synthetases
Thymidylate synthase/dCMP hydroxymethylase
Formin homology 2 domain (FH2 domain)
FtsH protease domain-like
YdhG-like
Galactose-binding domain-like
RuBisCo, C-terminal domain
Tetrapyrrole methylase
Homeodomain-like
VSV matrix protein
FMN-linked oxidoreductases
Vacuolar ATP synthase subunit C
DsbB-like
Phosphotyrosine protein phosphatases I
Arginase/deacetylase
Glutamine synthetase, N-terminal domain
YehR-like
NadA-like
MurE/MurF N-terminal domain
Major capsid protein gp5
HydA/Nqo6-like
Pectin lyase-like
FAS1 domain
Triosephosphate isomerase (TIM)
Fe,Mn superoxide dismutase (SOD), C-terminal domain
Autotransporter
PR-1-like
Resistin
Hypothetical protein MTH677
Stabilizer of iron transporter SufD
TRCF domain-like
TTHA1013/TTHA0281-like
Methuselah ectodomain
E2 regulatory, transactivation domain
Urocanase
Tubulin C-terminal domain-like
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
YonK-like
Head domain of nucleotide exchange factor GrpE
Urease metallochaperone UreE, C-terminal domain
CheC-like
THUMP domain-like
R1 subunit of ribonucleotide reductase, N-terminal domain
SH2 domain
Mib/herc2 domain-like
Nucleotide-diphospho-sugar transferases
Fertilization protein
Chemotaxis receptor methyltransferase CheR, N-terminal domain
CcmK-like
Rv2827c C-terminal domain-like
L-aspartase-like
Ribosomal protein L29 (L29p)
PDZ domain-like
C2 domain (Calcium/lipid-binding domain, CaLB)
Outer surface protein
C-terminal domain of RNA polymerase alpha subunit
Blood coagulation inhibitor (disintegrin)
Archaeal IMP cyclohydrolase PurO
Invasion protein A (SipA) , C-terminal actin binding domain
flu NP-like
RelE-like
ROP protein
ABC transporter involved in vitamin B12 uptake, BtuC
BTV NS2-like ssRNA-binding domain
PMP inhibitors
Bacterial aa3 type cytochrome c oxidase subunit IV
YgbK-like
PetL subunit of the cytochrome b6f complex
EF2458-like
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
Arabinanase/levansucrase/invertase
ADP-ribosylation
Dihydropteroate synthetase-like
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
YdhA-like
DNA primase core
Ras GEF
GMP synthetase C-terminal dimerisation domain
Release factor
Supernatant protein factor (SPF), C-terminal domain
TBP-interacting protein-like
UBC-like
LeuD/IlvD-like
Influenza virus matrix protein M1
DNA mismatch repair protein MutL
SPOC domain-like
TrmE connector domain
Hyaluronate lyase-like, C-terminal domain
VPA0735-like
Zinc domain conserved in yeast copper-regulated transcription factors
Hypothetical protein PH1602
Chorismate synthase, AroC
CCHHC domain
Trypsin-like serine proteases
Photosystem I reaction center subunit XI, PsaL
Ribosomal L11/L12e N-terminal domain
F1F0 ATP synthase subunit B, membrane domain
Inorganic pyrophosphatase
Hypothetical protein TT1725
Olfactory marker protein
GreA transcript cleavage protein, N-terminal domain
Aromatic compound dioxygenase
Domain of poly(ADP-ribose) polymerase
CSL zinc finger
Osmotin, thaumatin-like protein
PA2021-like
Bacteriochlorophyll A protein
Rab geranylgeranyltransferase alpha-subunit, insert domain
NAD(P)-linked oxidoreductase
N-terminal Zn binding domain of HIV integrase
XisI-like
Ribosomal protein S5 domain 2-like
XRCC4, N-terminal domain
SWIB/MDM2 domain
Photosystem II reaction center protein M, PsbM
Hut operon positive regulatory protein HutP
B12-dependent dehydatase associated subunit
Hepatitis B viral capsid (hbcag)
Cullin homology domain
EF-G C-terminal domain-like
DnaJ/Hsp40 cysteine-rich domain
Skp1 dimerisation domain-like
YerB-like
Cell-division inhibitor MinC, N-terminal domain
Formiminotransferase domain of formiminotransferase-cyclodeaminase.
RUN domain-like
Sec1/munc18-like (SM) proteins
LDH C-terminal domain-like
OmpA-like
(Phosphotyrosine protein) phosphatases II
RecG, N-terminal domain
Hypothetical protein MTH865
Prokaryotic type KH domain (KH-domain type II)
Formylmethanofuran:tetrahydromethanopterin formyltransferase
Hypothetical protein D-63
BAH domain
PEP carboxykinase-like
HupF/HypC-like
Antifungal protein (AGAFP)
Origin of replication-binding domain, RBD-like
Holliday junction resolvase RusA
HSC20 (HSCB), C-terminal oligomerisation domain
Preprotein translocase SecY subunit
MgtE N-terminal domain-like
YjeF N-terminal domain-like
YgaC/TfoX-N like
HAMP domain-like
Bacterial adhesins
Calcyclin-binding protein-like
Plant invertase/pectin methylesterase inhibitor
Sec-beta subunit
Hypothetical protein yfbM
Respiratory nitrate reductase 1 gamma chain
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
GK1464-like
TROVE domain-like
Chlorophyll a-b binding protein
Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor
Radical SAM enzymes
DEATH domain
Insulin-like
Kix domain of CBP (creb binding protein)
Bacterial GAP domain
Phospholipase C/P1 nuclease
EreA/ChaN-like
ValRS/IleRS/LeuRS editing domain
HP0242-like
STIV B116-like
HIPIP (high potential iron protein)
YojJ-like
FAD-linked oxidases, C-terminal domain
Photosystem II reaction centre subunit H, transmembrane region
post-HMGL domain-like
Phage tail proteins
Phospholipase D/nuclease
PGBD-like
Ran binding protein zinc finger-like
Peptidoglycan deacetylase N-terminal noncatalytic region
Spermadhesin, CUB domain
Lesion bypass DNA polymerase (Y-family), little finger domain
DNA topoisomerase I domain
Genome name 1:
Select Genome 1
Paste your set of amino acid sequences in fasta format:
Superfamily name:
Transferrin receptor-like dimerisation domain
Genome name 1:
Sus scrofa
Test run using sample sequence
>test1 FSGYPLYHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVFELANSIVLPFDCRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFDKSNPIVLRMMNDQLMFLERAFIDPLGLPDRPFYRHVIYAPSSHNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAAETLSEVA
