Option 1: Upload PDB file
1. Download 1j4v.pdb
Use right click on the link ---> save link target as.
2. Upload the file using the BROWSE option provided in the DIAL server page.
3. Press "Find domain" button
Other examples
Use right click on the link ---> save link target as to download exmaples.
1. pdb1gti
2. pdb9wga
3. pdb1bpl
4. pdb1at0
5. pdb1mnp
5. pdb3cd4
Option 2: Paste sequence
1. Copy the sequence and paste into the box provided in the DIAL server page.
>example1
RCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCPNNHCCSQYGHCGFGAEYCGA
GCQGGPCRADIKCGSQSGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWG
SCGIGPGYCGAGCQSGGCDAXRCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATC
PNNHCCSQYGHCGFGAEYCGAGCQGGPCRADIKCGSQSGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDK
PCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDA
2. Press "Find domain" button
Other examples:
>example2
LGKFSQTCYNSAIQGSVLTSTCERTNGGYNTSSIDLNSVIENVDGSLKWQPSNFIETCRNTQLAGSSELAAECKT
RAQQFVSTKINLDDHIANIDGTLKYELGKFSQTCYNSAIQGSVLTSTCERTNGGYNTSSIDLNSVIENVDGSLKW
QPSNFIETCRNTQLAGSSELAAECKTRAQQFVSTKINLDDHIANIDGTLKYE
>example3
QEEEAEQNLSELSGPWRTVYIGSTNPEKIQENGPFRTYFRELVFDDEKGTVDFYFSVKRDGKWKNVHVKATKQDD
GTYVADYEGQNVFKIVSLSRTHLVAHNINVDKHGQTTELTELFVKLNVEDEDLEKFWKLTEDKGIDKKNVVNFLE
NENHPHPEEEEAEQNLSELSGPWRTVYIGSTNPEKIQENGPFRTYFRELVFDDEKGTVDFYFSVKRDGKWKNVHV
KATKQDDGTYVADYEGQNVFKIVSLSRTHLVAHNINVDKHGQTTELTELFVKLNVEDEDLEKFWKLTEDKGIDKK
NVVNFLENENHPHP
>example4
CFTPESTALLESGVRKPLGELSIGDRVLSTANGQAVYSEVILFDRNLEQQNFVQLHTDGGAVLTVTPAHLVSVWQ
PESQKLTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREGTIVVNSVAASCYA
>example5
AVCPDGTRVSHAACCAFIPLAQDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEP
NFSANNGIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPEPQDSVTK
ILQRFEDAGGFTPFEVVSLLASHSVARADKVDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGFPGSANNTGEVASP
LPLGSGSDTGEMRLQSDFALAHDPRTACIWQGFVNEQAFMAASFRAAMSKLAVLGHNRNSLIDCSDVVPVPKPAT
GQPAMFPASTGPQDLELSCPSERFPTLTTQPGASQSLIAHCPDGSMSCPGVQFNGPA
>example6
KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLK
IEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLE
LQDSGTWTCTVLQNQKKVEFKIDIVVLA
Option 3: Biological Unit and domain definition
1. Download the pdb1yvs.
Use right click on the link ---> save link target as.
2. Copy the matrix and paste into the box provided in the DIAL server page.
REMARK 350 APPLY THE FOLLOWING TO CHAINS: NULL
REMARK 350 BIOMT1 1 -0.500030 0.866056 0.000000 0.00000
REMARK 350 BIOMT2 1 -0.865995 -0.499970 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -0.499970 -0.866056 0.000000 0.00000
REMARK 350 BIOMT2 2 0.865995 -0.500030 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000
[OR]
-0.500030 0.866056 0.000000 0.00000
-0.865995 -0.499970 0.000000 0.00000
0.000000 0.000000 1.000000 0.00000
-0.499970 -0.866056 0.000000 0.00000
0.865995 -0.500030 0.000000 0.00000
0.000000 0.000000 1.000000 0.00000
2. Press "Find domain" button
Other examples
Example 1
Download pdb1g96.
Copy the matrix and paste into the box provided in the DIAL server page.
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 140.53000
REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000
Example 2
Download pdb1byl.
Copy the matrix and paste into the box provided in the DIAL server page.
REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 111.50000
Example 3
Download pdb3ssi.
Copy the matrix and paste into the box provided in the DIAL server page.
REMARK 350 APPLY THE FOLLOWING TO CHAINS: NULL
REMARK 350 BIOMT1 1 -0.500000 0.866025 0.000000 0.00000
REMARK 350 BIOMT2 1 0.866025 0.500000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 115.28000
