SMotif

SMotif is a server to identify set of structural motifs from protein structures. Such motifs among structurally aligned proteins are recognized by the conservation of amino acid preference and solvent inaccessibility and are examined for the conservation of other features like secondary structural content, hydrogen bonding and residue packing.

Input 1: Paste Alignment (PIR/FASTA format)   [Help]    [Example run]

[Example input]

Input 2: Paste sequence of your structure(s) in PIR/FASTA format   [Help]    [Example run]

[Example input]

Input 3: Upload your structure(s) in PDB format   [Help]    [Example run]

PDB file1 : Name (optional)
PDB file2 : Name (optional)
PDB file3 : Name (optional)
PDB file4 : Name (optional)
PDB file5 : Name (optional)

Wish to upload more than 5 structures.

How many structures do you want to upload

Input 4: Enter PDB code, chain identifier and Residue number   [Help]    [Example run]    [Example input]

PDB code		Chain		Start residue no		End residue no

Wish to submit more than 5 structures.

How many structures do you want to submit

Contact:

Dr. R. Sowdhamini (mini@ncbs.res.in)

Dr. Saikat Chakrabarti

Dr. PN. Suganthan

G. Pugalenthi