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Pfam Domains mapped on to the structure: 3DZ8

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF00025 ADP-ribosylation factor family PF00025 PF00025
2 A PF00071 Ras family PF00071 PF00071
3 A PF00009 Elongation factor Tu GTP binding domain PF00009 PF00009

Gene Ontology Annotations: 3DZ8

No. GO ID GO Description Linkout - AmiGO
1 GO:0007264 small GTPase mediated signal transduction GO:0007264

Conserved Domain Database Superfamily Annotations: 3DZ8

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 3DZ8 206657 cd01865 Rab3 - cl09099
2 3DZ8 212613 cl09099 P-loop_NTPase superfamily - -
Structural Details of PDB entry 3DZ8

Structural Details of PDB entry 3DZ8

PDBid Chains Hinge Swapped Domain
3DZ8 A,B A:47-50,B:47-50 A:10-46,B:10-46

Swapped-domain interface residues and interactions:

Chains Residues
A 10, 11, 12, 13, 14, 15, 16, 17, 19, 40, 44, 48, 49, 50, 51, 52, 53, 54,
B 10, 11, 12, 13, 14, 15, 16, 17, 19, 40, 44, 48, 49, 50, 51, 52, 53, 54,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 47, 55, 56, 65, 67, 72, 84, 86, 87, 90, 187,
B 47, 55, 56, 65, 67, 72, 84, 86, 87, 90,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:3DZ8 B:3DZ8

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:3DZ8.ali
atm file:3DZ8.atm
cof file:3DZ8.cof
hbd file:3DZ8.hbd
html file:3DZ8.html
pdb file:3DZ8.pdb
ps file:3DZ8.ps
psa file:3DZ8.psa
rtf file:3DZ8.rtf
sst file:3DZ8.sst
tem file:3DZ8.tem