Home BrowseSearch Help Group

Pfam Domains mapped on to the structure: 3DNH

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF13883 Pyridoxamine 5'-phosphate oxidase PF13883 PF13883
2 A PF01243 Pyridoxamine 5'-phosphate oxidase PF01243 PF01243

Conserved Domain Database Superfamily Annotations: 3DNH

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 3DNH 212207 cl00381 PNPOx_like superfamily - -
2 3DNH 212207 cl00381 PNPOx_like superfamily - -
Structural Details of PDB entry 3DNH

Structural Details of PDB entry 3DNH

PDBid Chains Hinge Swapped Domain
3DNH A,B A:94-101,B:94-101 A:4-93,B:5-93

Swapped-domain interface residues and interactions:

Chains Residues
A 6, 8, 9, 10, 12, 39, 41, 43, 45, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 70, 73, 74, 75, 76, 77, 79, 86, 88, 90, 98, 99, 100, 106, 108,
B 6, 8, 9, 10, 12, 38, 39, 41, 43, 45, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 70, 73, 74, 75, 76, 79, 86, 88, 90, 94, 95, 98, 99, 100, 104, 106, 108,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 94, 95, 104, 130, 132, 136, 153, 155, 254,
B 97, 101, 136, 153, 155,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:3DNH B:3DNH

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:3DNH.ali
atm file:3DNH.atm
cof file:3DNH.cof
hbd file:3DNH.hbd
html file:3DNH.html
pdb file:3DNH.pdb
ps file:3DNH.ps
psa file:3DNH.psa
rtf file:3DNH.rtf
sst file:3DNH.sst
tem file:3DNH.tem