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Structural Details of PDB entry 3DMB

Structural Details of PDB entry 3DMB

PDBid Chains Hinge Swapped Domain
3DMB A,B A:75-78,B:75-78 A:79-145,B:79-145

Swapped-domain interface residues and interactions:

Chains Residues
A 33, 80, 82, 102, 103, 106, 126, 128, 130, 131, 135, 136, 137, 140, 145,
B 32, 33, 35, 80, 82, 102, 103, 106, 107, 128, 130, 137, 145,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 0, 2, 20, 26, 27, 28, 31, 34, 35, 69, 71, 73, 75, 76, 77,
B 18, 20, 26, 30, 31, 34, 69, 71, 73, 75, 76, 77,
C 16, 20, 35, 101, 102, 103,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:3DMB C:3DMB

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:3DMB.ali
atm file:3DMB.atm
cof file:3DMB.cof
hbd file:3DMB.hbd
html file:3DMB.html
pdb file:3DMB.pdb
ps file:3DMB.ps
psa file:3DMB.psa
rtf file:3DMB.rtf
sst file:3DMB.sst
tem file:3DMB.tem