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Pfam Domains mapped on to the structure: 3DKI

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF00291 Pyridoxal-phosphate dependent enzyme PF00291 PF00291

Conserved Domain Database Superfamily Annotations: 3DKI

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 3DKI 107204 cd01561 CBS_like - cl00342
2 3DKI 212605 cl00342 Trp-synth-beta_II superfamily - -
3 3DKI 212605 cl00342 Trp-synth-beta_II superfamily - -
Structural Details of PDB entry 3DKI

Structural Details of PDB entry 3DKI

PDBid Chains Hinge Swapped Domain
3DKI A,B A:13-16,B:13-16 A:3-12,B:0-12

Swapped-domain interface residues and interactions:

Chains Residues
A 3, 4, 5, 6, 7, 10, 15, 16, 17, 18, 171, 172,
B 0, 1, 2, 3, 4, 5, 6, 7, 10, 15, 16, 17, 18, 172,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 13, 20, 21, 26, 38, 44, 46, 47, 48, 88, 91, 92, 111, 112, 114, 115, 116, 117, 174, 175, 255, 256, 257, 258, 259, 260, 261, 298, 299, 301, 306, 307, 313,
B 20, 21, 26, 38, 44, 46, 47, 48, 88, 91, 92, 94, 108, 111, 112, 115, 116, 117, 255, 256, 257, 258, 259, 260, 261, 298, 299, 301, 306, 307,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationALA(2)THR, No mutationALA(2)THR,

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:3DKI B:3DKI

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:3DKI.ali
atm file:3DKI.atm
cof file:3DKI.cof
hbd file:3DKI.hbd
html file:3DKI.html
pdb file:3DKI.pdb
ps file:3DKI.ps
psa file:3DKI.psa
rtf file:3DKI.rtf
sst file:3DKI.sst
tem file:3DKI.tem