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Pfam Domains mapped on to the structure: 3D6T

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 B PF00025 ADP-ribosylation factor family PF00025 PF00025
2 B PF08477 Miro-like protein PF08477 PF08477
3 B PF01926 50S ribosome-binding GTPase PF01926 PF01926

Conserved Domain Database Superfamily Annotations: 3D6T

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 3D6T 212613 cl09099 P-loop_NTPase superfamily - -
Structural Details of PDB entry 3D6T

Structural Details of PDB entry 3D6T

PDBid Chains Hinge Swapped Domain
3D6T A,B A:1394-1398,B:1394-1398 A:1335-1393,B:1335-1393

Swapped-domain interface residues and interactions:

Chains Residues
A 1336, 1337, 1339, 1340, 1341, 1342, 1344, 1345, 1346, 1349, 1350, 1353, 1354, 1370, 1371, 1373, 1376, 1390, 1393, 1412, 1413, 1414, 1415, 1416, 1417, 1418, 1420, 1452, 1490, 1491, 1492, 1493, 1501,
B 1336, 1337, 1339, 1340, 1341, 1342, 1344, 1345, 1346, 1349, 1350, 1353, 1354, 1370, 1371, 1373, 1376, 1390, 1393, 1412, 1413, 1414, 1415, 1416, 1417, 1418, 1420, 1452, 1490, 1491, 1492, 1493, 1501,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 1398, 1401, 1403, 1404, 1405, 1406, 1408, 1410, 1427, 1430, 1434, 1437, 1438, 1441, 1453, 1488, 1500, 1504, 1505,
B 1398, 1401, 1403, 1404, 1405, 1406, 1408, 1410, 1427, 1430, 1434, 1437, 1438, 1441, 1453, 1488, 1500, 1504,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:3D6T B:3D6T

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:3D6T.ali
atm file:3D6T.atm
cof file:3D6T.cof
hbd file:3D6T.hbd
html file:3D6T.html
pdb file:3D6T.pdb
ps file:3D6T.ps
psa file:3D6T.psa
rtf file:3D6T.rtf
sst file:3D6T.sst
tem file:3D6T.tem